Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCC7424_RS13750 Genome accession   NC_011729
Coordinates   3107883..3108245 (-) Length   120 a.a.
NCBI ID   WP_041237741.1    Uniprot ID   -
Organism   Gloeothece citriformis PCC 7424     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3102883..3113245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCC7424_RS13740 (PCC7424_2793) - 3104822..3107158 (-) 2337 WP_015954803.1 methyl-accepting chemotaxis protein -
  PCC7424_RS13745 (PCC7424_2794) - 3107367..3107864 (-) 498 WP_015954804.1 chemotaxis protein CheW -
  PCC7424_RS13750 (PCC7424_2795) pilH 3107883..3108245 (-) 363 WP_041237741.1 response regulator Machinery gene
  PCC7424_RS13755 (PCC7424_2796) - 3108560..3109540 (-) 981 WP_015954806.1 ABC transporter ATP-binding protein -
  PCC7424_RS13760 rraA 3109812..3110156 (-) 345 Protein_2784 ribonuclease E activity regulator RraA -
  PCC7424_RS13765 (PCC7424_2798) - 3110358..3111035 (-) 678 WP_239005356.1 RNA-guided endonuclease InsQ/TnpB family protein -
  PCC7424_RS13770 (PCC7424_2799) tnpA 3111086..3111505 (+) 420 WP_012597593.1 IS200/IS605-like element ISCysp14 family transposase -
  PCC7424_RS30715 - 3111590..3111736 (-) 147 WP_203457576.1 hypothetical protein -
  PCC7424_RS13775 (PCC7424_2800) - 3111779..3113230 (-) 1452 WP_338028720.1 MFS transporter -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13459.63 Da        Isoelectric Point: 5.1846

>NTDB_id=32139 PCC7424_RS13750 WP_041237741.1 3107883..3108245(-) (pilH) [Gloeothece citriformis PCC 7424]
MTIVLVVEDTLSEQELISLYLRNAGYTVITANDGKEAMEKTLAQKPDVIVTDVVMPNMNGFELCRSIKKNPQTQKLPVIA
CTSKTQELDRLWGMKQGIDVYVTKPFTQEELVRAVRSVAN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=32139 PCC7424_RS13750 WP_041237741.1 3107883..3108245(-) (pilH) [Gloeothece citriformis PCC 7424]
ATGACTATTGTTTTAGTGGTTGAAGATACTCTTTCAGAACAAGAATTAATCAGTCTGTATTTACGTAATGCAGGCTACAC
AGTGATCACAGCTAACGATGGCAAAGAAGCGATGGAAAAAACCCTCGCTCAAAAACCGGATGTTATCGTCACGGATGTGG
TTATGCCAAATATGAACGGTTTTGAATTGTGTCGCAGTATTAAAAAAAATCCTCAAACTCAAAAATTACCCGTGATTGCT
TGTACGTCTAAAACACAAGAACTCGATCGTCTTTGGGGAATGAAACAAGGAATAGATGTATATGTCACTAAACCTTTTAC
CCAAGAAGAACTGGTTCGTGCCGTTAGATCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50

98.333

0.492

Multiple sequence alignment