Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   D8767_RS20880 Genome accession   NZ_CP033104
Coordinates   4445270..4445905 (-) Length   211 a.a.
NCBI ID   WP_016391244.1    Uniprot ID   -
Organism   Pseudomonas sp. LTGT-11-2Z     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4440270..4450905
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8767_RS20850 (D8767_20850) murB 4441367..4442386 (-) 1020 WP_016715131.1 UDP-N-acetylmuramate dehydrogenase -
  D8767_RS20855 (D8767_20855) - 4442383..4442847 (-) 465 WP_016715130.1 low molecular weight protein-tyrosine-phosphatase -
  D8767_RS20860 (D8767_20860) kdsB 4442847..4443611 (-) 765 WP_016715129.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  D8767_RS20865 (D8767_20865) - 4443608..4443793 (-) 186 WP_003247142.1 Trm112 family protein -
  D8767_RS20870 (D8767_20870) lpxK 4443838..4444839 (-) 1002 WP_016715128.1 tetraacyldisaccharide 4'-kinase -
  D8767_RS20875 (D8767_20875) - 4444839..4445273 (-) 435 WP_012271149.1 biopolymer transporter ExbD -
  D8767_RS20880 (D8767_20880) exbB 4445270..4445905 (-) 636 WP_016391244.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  D8767_RS20885 (D8767_20885) - 4446030..4448272 (-) 2243 Protein_4118 DNA internalization-related competence protein ComEC/Rec2 -
  D8767_RS20890 (D8767_20890) - 4448415..4448921 (+) 507 Protein_4119 DUF2062 domain-containing protein -
  D8767_RS20895 (D8767_20895) - 4448931..4449710 (-) 780 WP_016715125.1 ABC transporter permease -
  D8767_RS20900 (D8767_20900) - 4449707..4450639 (-) 933 WP_016715124.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22845.14 Da        Isoelectric Point: 7.3616

>NTDB_id=321384 D8767_RS20880 WP_016391244.1 4445270..4445905(-) (exbB) [Pseudomonas sp. LTGT-11-2Z]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=321384 D8767_RS20880 WP_016391244.1 4445270..4445905(-) (exbB) [Pseudomonas sp. LTGT-11-2Z]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGCTGGGCGAAATCCTTGCCGCAGGCCTGGCCAAC
TCGCGCCATGGCCGCGAAATCATGAAAGAGTGCATCGAGGAAGCCGCCTCGCGCGTCATCCACGAGCTGGAGCGCTACAT
CAGCACCCTCGGCACCATTGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTACTGGCCGGGGGGATCTCCAAGGCCCTGGTGACCACCGCA
GCAGGCCTGATGGTCGGTATCCCGGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATTGATGAGCTGGTGGTGGGCAT
GGAGCAGGAAGCGATCAAGCTGGTGGAAGTGATCCAGGGCGATCGCGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829

Multiple sequence alignment