Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   D8767_RS04965 Genome accession   NZ_CP033104
Coordinates   1102006..1103376 (+) Length   456 a.a.
NCBI ID   WP_012274175.1    Uniprot ID   A0A1W2CNH3
Organism   Pseudomonas sp. LTGT-11-2Z     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097006..1108376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8767_RS04935 (D8767_04935) cydB 1097265..1098272 (+) 1008 WP_016713450.1 cytochrome d ubiquinol oxidase subunit II -
  D8767_RS04940 (D8767_04940) - 1098282..1098437 (+) 156 WP_016713451.1 DUF2474 domain-containing protein -
  D8767_RS04945 (D8767_04945) - 1098469..1099593 (-) 1125 WP_016713452.1 methyltransferase -
  D8767_RS04950 (D8767_04950) - 1099678..1100385 (-) 708 WP_016713453.1 autoinducer binding domain-containing protein -
  D8767_RS04955 (D8767_04955) - 1100600..1101376 (+) 777 WP_028699862.1 ferredoxin--NADP reductase -
  D8767_RS04960 (D8767_04960) mscL 1101410..1101829 (-) 420 WP_028699863.1 large-conductance mechanosensitive channel protein MscL -
  D8767_RS04965 (D8767_04965) radA 1102006..1103376 (+) 1371 WP_012274175.1 DNA repair protein RadA Machinery gene
  D8767_RS04970 (D8767_04970) - 1103472..1104989 (-) 1518 WP_016713456.1 nucleobase:cation symporter-2 family protein -
  D8767_RS04975 (D8767_04975) - 1105253..1105618 (-) 366 WP_016713457.1 PilZ domain-containing protein -
  D8767_RS04980 (D8767_04980) - 1105796..1107862 (+) 2067 WP_016713458.1 carbon starvation CstA family protein -
  D8767_RS04985 (D8767_04985) - 1107880..1108077 (+) 198 WP_016713459.1 YbdD/YjiX family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48767.21 Da        Isoelectric Point: 6.8985

>NTDB_id=321378 D8767_RS04965 WP_012274175.1 1102006..1103376(+) (radA) [Pseudomonas sp. LTGT-11-2Z]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSSGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARVEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEPPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=321378 D8767_RS04965 WP_012274175.1 1102006..1103376(+) (radA) [Pseudomonas sp. LTGT-11-2Z]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACCTTCCCCAAATGGGCAGGCCAGTGTGGCGAATG
CGGGGCCTGGAACACCCTGGTCGAAACCATGATCGAGAGCGGCGGCGCGGCGGCGCCCAGCAGCGGCCGCGCCGGCTGGA
CCGGGCAACAGGCACAGATCAAGACCTTGGCCGAAGTCAGCGTCGAGGAAATCCCGCGCTTTACCACCAGCAGCACTGAA
CTGGACCGCGTGCTGGGAGGAGGCCTGGTGGATGGCTCGGTGGTGCTTATTGGTGGCGACCCCGGCATCGGCAAGTCGAC
CATTCTGCTGCAGACGTTATGCAACATCGCCGTAGGCATGCCGGCACTGTATGTGACGGGTGAGGAATCGCAGCAGCAGG
TGGCCATGCGCTCACGGCGCCTGGGCTTGCCCCAGGACCAGCTCAAGGTGATGACAGAAACCTGCATCGAGACCATCATC
GCCACAGCACGTGTCGAGAAGCCACGGGTGATGGTGATCGACTCGATCCAGACCATCTTCACCGAACAGTTGCAATCAGC
GCCCGGTGGCGTGGCCCAGGTGCGTGAAAGTACGGCGCTGCTGGTGCGTTACGCCAAGCAAAGCGGCACGGCCATCTTCT
TGGTCGGCCATGTGACCAAGGAAGGCTCGCTGGCCGGCCCGCGGGTACTGGAGCACATGGTCGACACCGTGCTGTATTTC
GAGGGTGAGTCCGATGGCCGCCTGCGCTTGCTGCGGGCGGTGAAGAACCGCTTTGGCGCGGTCAACGAACTGGGTGTGTT
CGGCATGACCGACCGTGGTCTTAAAGAAGTCTCCAACCCTTCGGCGATTTTCCTCAACCGCACCCAGGAGGAAGTACCGG
GCAGCGTGGTCATGGCGACTTGGGAGGGCACCCGGCCGATGCTGGTCGAGGTGCAGGCACTGGTCGACGACAGCCACCTG
GCCAACCCTCGGCGGGTGACCCTGGGCCTGGACCAGAACCGTCTGGCCATGTTGTTGGCGGTGTTGCACCGCCACGGCGG
GATTCCGACCCACGATCAGGACGTGTTCCTCAACGTGGTGGGCGGGGTGAAGGTGCTGGAGACTGCCTCGGACCTGGCGC
TGCTGGCGGCGGTGATGTCCAGCTTGCGCAACCGGCCACTCGCCCATGGGCTGCTGGTGTTTGGCGAGATTGGCTTGTCG
GGCGAGGTGCGGCCTGTGCCCAGCGGTCAGGAGCGGTTGAAGGAGGCGGCCAAGCACGGTTTCAAGCGTGCCATCGTGCC
CAAGGGCAATGCGCCGAAAGAACCGCCAGCGGGGTTGCAGGTGATTGCCGTGACTCGGCTGGAGCAGGCTCTGGATGCAC
TGTTCGAGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W2CNH3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus mitis NCTC 12261

46.053

100

0.461

Multiple sequence alignment