Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   GALLO_RS00215 Genome accession   NC_013798
Coordinates   30222..30977 (+) Length   251 a.a.
NCBI ID   WP_009853183.1    Uniprot ID   A0A1I7JAI7
Organism   Streptococcus gallolyticus UCN34     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 25222..35977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GALLO_RS00195 (GALLO_0018) mreD 25753..26259 (+) 507 WP_012961313.1 rod shape-determining protein MreD -
  GALLO_RS00200 (GALLO_0019) - 26361..27743 (+) 1383 WP_012961314.1 CHAP domain-containing protein -
  GALLO_RS00205 (GALLO_0020) - 27886..28854 (+) 969 WP_003062784.1 ribose-phosphate diphosphokinase -
  GALLO_RS00210 (GALLO_0021) - 29057..30232 (+) 1176 WP_009853182.1 pyridoxal phosphate-dependent aminotransferase -
  GALLO_RS00215 (GALLO_0022) recO 30222..30977 (+) 756 WP_009853183.1 DNA repair protein RecO Machinery gene
  GALLO_RS00220 (GALLO_0023) plsX 31149..32144 (+) 996 WP_012961315.1 phosphate acyltransferase PlsX -
  GALLO_RS00225 (GALLO_0024) - 32161..32403 (+) 243 WP_009853185.1 acyl carrier protein -
  GALLO_RS00230 (GALLO_0025) purC 32528..33238 (+) 711 WP_009853186.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 251 a.a.        Molecular weight: 29160.50 Da        Isoelectric Point: 6.4977

>NTDB_id=32136 GALLO_RS00215 WP_009853183.1 30222..30977(+) (recO) [Streptococcus gallolyticus UCN34]
MQTKETYGLVLYNRNYREDDKLVKIFTETNGKHMFFVKHAGKSRFNSVIQPLTVAKFILKINDTGLSFIEDYKEVDSFKE
INADLFKLSYASYVTALADAAVPDGVADPQLFAFVNKTLSLMEEGLDYEILTNIFEIQLLERFGVSLNFHECAFCHRVGL
PFDFSHKYSGLLCPEHYGKDDYRSHLDPNVLYLVDRFQAIHFDELKTISVKPEMKRKLRLFIDDIYDNYVGLRLKSKKFI
DDLGTWGNIMK

Nucleotide


Download         Length: 756 bp        

>NTDB_id=32136 GALLO_RS00215 WP_009853183.1 30222..30977(+) (recO) [Streptococcus gallolyticus UCN34]
ATGCAAACTAAGGAAACTTATGGTCTTGTCCTCTATAATCGTAATTATCGTGAGGATGATAAGCTAGTCAAAATTTTTAC
AGAAACCAATGGAAAGCATATGTTTTTTGTTAAACATGCTGGTAAATCTCGGTTTAATTCTGTTATTCAGCCGTTAACGG
TGGCAAAATTTATTTTAAAAATTAATGATACAGGTCTGTCTTTCATTGAAGATTATAAGGAAGTTGACTCTTTTAAGGAA
ATTAATGCAGATTTGTTTAAGTTGTCCTATGCTTCTTATGTGACAGCATTGGCGGATGCAGCTGTGCCAGATGGTGTGGC
AGACCCGCAGTTGTTTGCATTTGTTAATAAGACGCTTTCCTTAATGGAAGAGGGACTTGACTACGAAATTTTGACTAATA
TTTTTGAGATTCAACTTTTAGAACGATTTGGTGTTAGTCTTAATTTTCATGAGTGTGCTTTTTGTCATCGGGTTGGATTG
CCCTTTGACTTTTCGCACAAATATTCTGGTCTGCTTTGTCCAGAGCATTATGGTAAAGATGATTATCGTAGTCATCTTGA
TCCGAATGTGCTGTACCTGGTGGACCGATTTCAAGCCATTCATTTTGATGAATTAAAGACGATTTCAGTTAAGCCTGAGA
TGAAACGAAAATTGCGTTTATTTATTGATGATATTTATGATAATTATGTCGGTCTTCGTTTGAAAAGTAAAAAATTCATT
GATGATTTAGGGACTTGGGGAAATATTATGAAATAA

Domains

Predicted by InterProScan.

Recombination protein O C terminal (RecO_C)

(84-237)

Recombination protein O N terminal (RecO_N)

(1-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I7JAI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

63.347

100

0.633

Multiple sequence alignment