Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FEL02_RS20840 Genome accession   NZ_CP040313
Coordinates   4217214..4217729 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain M7638     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4212214..4222729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL02_RS20815 (FEL02_21425) ygaZ 4212613..4213350 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FEL02_RS20820 (FEL02_21430) ygaH 4213340..4213675 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  FEL02_RS20825 (FEL02_21435) emrR 4213766..4214296 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FEL02_RS20830 (FEL02_21440) emrA 4214423..4215595 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FEL02_RS20835 (FEL02_21445) emrB 4215612..4217150 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FEL02_RS20840 (FEL02_21450) luxS 4217214..4217729 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  FEL02_RS20845 (FEL02_21455) gshA 4217879..4219435 (-) 1557 WP_000611788.1 glutamate--cysteine ligase -
  FEL02_RS20850 (FEL02_21460) yqaA 4219508..4219936 (-) 429 WP_001287450.1 YqaA family protein -
  FEL02_RS20855 (FEL02_21465) yqaB 4219933..4220499 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FEL02_RS20885 (FEL02_21495) csrA 4221727..4221912 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=321330 FEL02_RS20840 WP_001130215.1 4217214..4217729(-) (luxS) [Escherichia coli strain M7638]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=321330 FEL02_RS20840 WP_001130215.1 4217214..4217729(-) (luxS) [Escherichia coli strain M7638]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725