Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EAH50_RS16235 Genome accession   NZ_CP033096
Coordinates   2856804..2857433 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain CP53     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2851804..2862433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAH50_RS16220 (EAH50_16445) helD 2852046..2854100 (-) 2055 WP_122056970.1 DNA helicase IV -
  EAH50_RS16225 (EAH50_16450) yccF 2854223..2854669 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EAH50_RS16230 (EAH50_16455) yccS 2854679..2856841 (+) 2163 WP_000875061.1 YccS family putative transporter -
  EAH50_RS16235 (EAH50_16460) sxy/tfoX 2856804..2857433 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EAH50_RS16240 (EAH50_16465) sulA 2857652..2858161 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  EAH50_RS16245 (EAH50_16470) ompA 2858518..2859558 (+) 1041 WP_001400178.1 porin OmpA -
  EAH50_RS16250 (EAH50_16475) matP 2859634..2860086 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  EAH50_RS16255 (EAH50_16480) ycbZ 2860272..2862032 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=321306 EAH50_RS16235 WP_000839153.1 2856804..2857433(-) (sxy/tfoX) [Escherichia coli strain CP53]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=321306 EAH50_RS16235 WP_000839153.1 2856804..2857433(-) (sxy/tfoX) [Escherichia coli strain CP53]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment