Detailed information    

insolico Bioinformatically predicted

Overview


Name   sxy/tfoX   Type   Regulator
Locus tag   EAS44_RS16100 Genome accession   NZ_CP033092
Coordinates   3039957..3040586 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0D8W3X3
Organism   Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context


Location: 3034957..3045586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAS44_RS16085 (EAS44_07165) helD 3035199..3037253 (-) 2055 WP_001350178.1 DNA helicase IV -
  EAS44_RS16090 (EAS44_07170) yccF 3037376..3037822 (+) 447 WP_001261236.1 YccF domain-containing protein -
  EAS44_RS16095 (EAS44_07175) yccS 3037832..3039994 (+) 2163 WP_000875041.1 YccS family putative transporter -
  EAS44_RS16100 (EAS44_07180) sxy/tfoX 3039957..3040586 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EAS44_RS16105 (EAS44_07185) sulA 3040805..3041314 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  EAS44_RS16110 (EAS44_07190) ompA 3041670..3042710 (+) 1041 WP_001350588.1 porin OmpA -
  EAS44_RS16115 (EAS44_07195) matP 3042788..3043240 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  EAS44_RS16120 (EAS44_07200) ycbZ 3043426..3045186 (+) 1761 WP_000156501.1 AAA family ATPase -

Sequence


Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=321284 EAS44_RS16100 WP_000839136.1 3039957..3040586(-) (sxy/tfoX) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=321284 EAS44_RS16100 WP_000839136.1 3039957..3040586(-) (sxy/tfoX) [Escherichia coli DSM 30083 = JCM 1649 = ATCC 11775]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D8W3X3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99


Multiple sequence alignment