Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EAE30_RS07700 Genome accession   NZ_CP033078
Coordinates   543116..543634 (+) Length   172 a.a.
NCBI ID   WP_123015396.1    Uniprot ID   -
Organism   Vibrio zhugei strain HBUAS61001     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 538116..548634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAE30_RS07690 gshA 540918..542480 (+) 1563 WP_123015395.1 glutamate--cysteine ligase -
  EAE30_RS07695 - 542496..543089 (+) 594 WP_123017297.1 hypothetical protein -
  EAE30_RS07700 luxS 543116..543634 (+) 519 WP_123015396.1 S-ribosylhomocysteine lyase Regulator
  EAE30_RS07705 - 543733..545013 (-) 1281 WP_123015397.1 CNNM domain-containing protein -
  EAE30_RS07710 - 545099..545893 (-) 795 WP_123015398.1 inner membrane protein YpjD -
  EAE30_RS07715 ffh 546108..547484 (+) 1377 WP_123015399.1 signal recognition particle protein -
  EAE30_RS07720 rpsP 547703..547951 (+) 249 WP_123015400.1 30S ribosomal protein S16 -
  EAE30_RS07725 rimM 547976..548530 (+) 555 WP_123015401.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18961.63 Da        Isoelectric Point: 4.4836

>NTDB_id=321212 EAE30_RS07700 WP_123015396.1 543116..543634(+) (luxS) [Vibrio zhugei strain HBUAS61001]
MPLLDSFTVDHTRMHAPAVRVAKNMQTPKGDDITVFDLRFTVPNEALLSEKGIHTLEHLFAGFMRAHLNGDDVEIIDISP
MGCRTGFYMSLIGTPGEQQVADAWLAAMNDVLKVADQNQIPELNEYQCGTAKMHSLDEAKQIAQAVITSGIQVNKNDDLA
LPDAMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=321212 EAE30_RS07700 WP_123015396.1 543116..543634(+) (luxS) [Vibrio zhugei strain HBUAS61001]
ATGCCGTTATTAGACAGCTTTACCGTCGATCACACGCGTATGCATGCCCCAGCCGTTCGTGTTGCTAAGAACATGCAAAC
GCCTAAAGGTGATGACATTACGGTGTTTGACTTACGTTTTACCGTACCCAATGAAGCGCTCCTTTCTGAAAAAGGGATTC
ATACACTAGAGCACCTATTTGCTGGCTTTATGCGTGCACACCTTAATGGTGATGATGTTGAAATCATTGATATTTCTCCA
ATGGGATGTCGTACTGGTTTTTACATGAGCTTGATTGGCACCCCAGGCGAACAGCAAGTGGCGGATGCATGGTTAGCGGC
AATGAACGATGTGTTGAAAGTGGCGGATCAAAACCAAATTCCTGAGTTGAATGAATATCAATGTGGTACGGCGAAGATGC
ACTCGCTTGATGAAGCGAAGCAAATTGCACAAGCCGTCATTACCAGTGGTATTCAAGTCAATAAAAATGATGATCTCGCA
CTGCCAGACGCAATGCTGCAAGAACTGAAAGTTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

81.287

99.419

0.808

Multiple sequence alignment