Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   D8682_RS07385 Genome accession   NZ_CP033076
Coordinates   1225944..1226558 (-) Length   204 a.a.
NCBI ID   WP_064548155.1    Uniprot ID   A0A3G2IBN4
Organism   Buttiauxella sp. 3AFRM03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1220944..1231558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8682_RS07370 (D8682_07370) helD 1221154..1223208 (-) 2055 WP_121813935.1 DNA helicase IV -
  D8682_RS07375 (D8682_07375) - 1223341..1223787 (+) 447 WP_064548151.1 YccF domain-containing protein -
  D8682_RS07380 (D8682_07380) yccS 1223812..1225947 (+) 2136 WP_121813936.1 YccS family putative transporter -
  D8682_RS07385 (D8682_07385) sxy/tfoX 1225944..1226558 (-) 615 WP_064548155.1 TfoX/Sxy family DNA transformation protein Regulator
  D8682_RS07390 (D8682_07390) sulA 1226779..1227288 (+) 510 WP_121813937.1 SOS-induced cell division inhibitor SulA -
  D8682_RS07395 (D8682_07395) ompA 1227649..1228719 (+) 1071 WP_121815658.1 porin OmpA -
  D8682_RS07400 (D8682_07400) matP 1228822..1229271 (-) 450 WP_064548160.1 macrodomain Ter protein MatP -
  D8682_RS07405 (D8682_07405) - 1229447..1231201 (+) 1755 WP_121813938.1 Lon protease family protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23372.98 Da        Isoelectric Point: 10.1624

>NTDB_id=321181 D8682_RS07385 WP_064548155.1 1225944..1226558(-) (sxy/tfoX) [Buttiauxella sp. 3AFRM03]
MKSRSYARIHQSKEYLAPLGDINYRSLFGGYSLTVENVVFAMVSEGELYLRACEQSEVYFVARASESLVYNKRGRAIALN
YYHVDEGLWRDRQKLLQLSTDALFSARREKSRLKAQQRLKDLPNLTHSLEMMLWEVGIADVRTLHAYGAKRSWIKLRHLK
KGLGVQVLLALAGAICGVHEAALPAATRRELVEWGHLYAQRHTR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=321181 D8682_RS07385 WP_064548155.1 1225944..1226558(-) (sxy/tfoX) [Buttiauxella sp. 3AFRM03]
ATGAAGAGCCGGTCTTATGCAAGGATTCATCAATCAAAAGAATATCTAGCGCCATTAGGTGATATAAATTATCGCTCGCT
ATTTGGTGGCTATAGTTTGACCGTCGAAAATGTGGTGTTTGCCATGGTTTCTGAGGGAGAATTGTATCTACGTGCCTGCG
AACAATCGGAAGTTTACTTTGTTGCAAGAGCGTCAGAGTCTCTGGTTTATAACAAACGTGGACGAGCCATTGCGCTCAAT
TATTATCATGTCGATGAAGGACTGTGGCGTGATCGGCAAAAGCTGTTGCAGCTTTCAACCGATGCATTGTTTAGCGCTCG
CCGTGAGAAATCTCGCCTGAAGGCGCAACAACGTCTCAAAGATTTACCTAATTTAACTCACAGCCTGGAGATGATGTTGT
GGGAAGTCGGGATTGCTGACGTGCGCACCCTTCATGCTTATGGTGCAAAACGGTCGTGGATAAAACTGAGACATTTGAAG
AAAGGGCTAGGGGTACAAGTCTTGTTGGCTTTAGCAGGGGCTATTTGTGGTGTTCATGAAGCCGCACTCCCGGCGGCAAC
GCGCCGGGAGTTGGTCGAGTGGGGGCATCTTTACGCGCAACGACACACCCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3G2IBN4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

56.923

95.588

0.544

Multiple sequence alignment