Detailed information NTG0321175

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FEK99_RS21090
• Genome accession: NZ_CP040309
• Coordinates: 4269844..4270836 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 21B8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4264844..4275836

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FEK99_RS21065 (FEK99_21680)	pphB	4266206..4266862 (+)	657	WP_001141350.1	protein-serine/threonine phosphatase	-
FEK99_RS21070 (FEK99_21685)	-	4266903..4267139 (-)	237	WP_000562982.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
FEK99_RS21075 (FEK99_21690)	-	4267150..4268577 (-)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
FEK99_RS21080 (FEK99_21695)	-	4268577..4269170 (-)	594	WP_000767724.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
FEK99_RS21085 (FEK99_21700)	-	4269317..4269724 (+)	408	WP_000175365.1	MarR family transcriptional regulator	-
FEK99_RS21090 (FEK99_21705)	rpoS	4269844..4270836 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
FEK99_RS21095 (FEK99_21710)	nlpD	4270899..4271993 (-)	1095	WP_306256364.1	murein hydrolase activator NlpD	-
FEK99_RS21100 (FEK99_21715)	pcm	4272178..4272804 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
FEK99_RS21105 (FEK99_21720)	surE	4272798..4273559 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
FEK99_RS21110 (FEK99_21725)	truD	4273540..4274589 (-)	1050	WP_000568934.1	tRNA pseudouridine(13) synthase TruD	-
FEK99_RS21115 (FEK99_21730)	ispF	4274586..4275065 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FEK99_RS21120 (FEK99_21735)	ispD	4275065..4275775 (-)	711	WP_000246158.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=321175 FEK99_RS21090 WP_000081550.1 4269844..4270836(-) (rpoS) [Escherichia coli strain 21B8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=321175 FEK99_RS21090 WP_000081550.1 4269844..4270836(-) (rpoS) [Escherichia coli strain 21B8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGTGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715