Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   EAG14_RS20590 Genome accession   NZ_CP033069
Coordinates   4611319..4612701 (-) Length   460 a.a.
NCBI ID   WP_099657509.1    Uniprot ID   -
Organism   Acidovorax sp. 1608163     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4606319..4617701
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EAG14_RS20560 (EAG14_20560) - 4606930..4607643 (+) 714 WP_240456859.1 hypothetical protein -
  EAG14_RS20565 (EAG14_20565) - 4607652..4608392 (+) 741 WP_121729981.1 glycosyltransferase family 25 protein -
  EAG14_RS20570 (EAG14_20570) - 4608402..4609499 (-) 1098 WP_121729982.1 glycosyltransferase -
  EAG14_RS20575 (EAG14_20575) - 4609534..4609740 (-) 207 WP_099657511.1 zinc-finger domain-containing protein -
  EAG14_RS20580 (EAG14_20580) - 4609743..4610693 (-) 951 WP_099657510.1 branched-chain amino acid transaminase -
  EAG14_RS20585 (EAG14_20585) - 4610792..4611205 (-) 414 WP_121730577.1 glycerate kinase -
  EAG14_RS20590 (EAG14_20590) radA 4611319..4612701 (-) 1383 WP_099657509.1 DNA repair protein RadA Machinery gene
  EAG14_RS20595 (EAG14_20595) hpaI 4612814..4613644 (+) 831 WP_099743710.1 4-hydroxy-2-oxoheptanedioate aldolase -
  EAG14_RS20600 (EAG14_20600) - 4613692..4614669 (+) 978 WP_121729983.1 2-dehydropantoate 2-reductase -
  EAG14_RS20605 (EAG14_20605) - 4614744..4615358 (+) 615 WP_121729984.1 glutathione S-transferase family protein -
  EAG14_RS20610 (EAG14_20610) - 4615567..4617147 (-) 1581 WP_099657505.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48065.47 Da        Isoelectric Point: 7.1208

>NTDB_id=321155 EAG14_RS20590 WP_099657509.1 4611319..4612701(-) (radA) [Acidovorax sp. 1608163]
MAKDKTTFTCSECGGTSPRWLGKCPSCGAWNTLVETVAEAGAGKNRLSTPQGYAGLANAQAVTPLAAIEAQDVARTPSGI
DELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALQRAGLPTLYVTGEESGAQVALRSRRLGIEGSQVQLLAEIQLE
KILATVEATQPSVVVIDSIQTTYSDQLTSAPGSVAQVRECAAHLTRMAKGTGIAVILVGHVTKEGALAGPRVLEHMVDTV
LYFEGDTHSQFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVSNPSAIFLSQHSDPVPGSCVMVTLEGTRPMLVEIQALVDS
GGPSPRRLSVGLDKDRLAMLLAVLHRHAGVACMDQDVFVNAVGGVRISEPAADLAVMLSITSSLRGKALPRGFLAFGEVG
LAGEVRPAPRGQERLKEAAKLGFSVAVVPKANAPKKPIEGLTIHAVERVEEAMNVVRGLV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=321155 EAG14_RS20590 WP_099657509.1 4611319..4612701(-) (radA) [Acidovorax sp. 1608163]
ATGGCCAAAGACAAAACCACCTTCACCTGCTCCGAATGCGGCGGCACCAGCCCGCGCTGGCTGGGCAAATGCCCGTCCTG
CGGCGCCTGGAACACGCTGGTGGAAACCGTGGCGGAAGCGGGCGCTGGCAAAAACCGCCTGAGTACGCCGCAAGGCTACG
CCGGTCTGGCCAACGCGCAGGCTGTGACGCCACTGGCCGCCATCGAGGCCCAGGACGTGGCGCGCACCCCCAGCGGCATC
GACGAGCTGGACCGTGTGCTGGGCGGCGGCATCGTGGAGGGCGGCGTGGTGCTCATCGGGGGCGATCCGGGCATTGGCAA
ATCGACCCTGCTGTTGCAGGCCATGGACGCGCTGCAGCGCGCAGGCCTGCCCACCCTGTATGTGACGGGTGAGGAAAGCG
GCGCCCAGGTGGCGCTGCGCTCGCGGCGCCTGGGCATTGAGGGCAGCCAGGTGCAGCTGCTGGCCGAGATCCAGCTCGAA
AAAATTCTGGCGACGGTCGAGGCCACGCAACCGTCCGTGGTCGTCATCGACTCCATCCAGACGACCTATTCCGACCAGCT
CACCAGCGCACCGGGCTCGGTCGCCCAGGTGCGCGAATGCGCGGCGCACCTCACGCGCATGGCCAAAGGCACGGGCATTG
CGGTCATTCTGGTCGGCCACGTCACTAAAGAAGGCGCGCTGGCTGGGCCGCGCGTGCTGGAGCACATGGTGGACACGGTG
CTGTACTTCGAAGGCGACACGCACAGCCAGTTCCGCCTGGTGCGCGCCATCAAGAACCGCTTTGGCGCTGTGAACGAGAT
CGGCGTGTTCGCCATGACCGAAAAGGGCCTCAAGGGCGTGAGCAACCCGAGCGCCATCTTTTTGAGCCAGCACAGCGATC
CCGTACCGGGCAGCTGCGTGATGGTGACGCTGGAAGGCACGCGCCCCATGCTGGTCGAGATCCAGGCGCTGGTGGACAGC
GGCGGGCCCAGCCCGCGCCGCCTGTCGGTGGGCCTGGACAAGGACCGCCTGGCCATGCTGCTGGCCGTGCTGCACCGCCA
CGCGGGCGTGGCCTGCATGGACCAGGATGTGTTTGTGAACGCGGTGGGCGGCGTGCGCATCAGCGAGCCTGCAGCCGACC
TCGCGGTCATGCTGTCCATCACGAGCAGCCTGCGGGGCAAGGCGCTGCCCCGGGGCTTTTTGGCCTTTGGTGAAGTGGGG
CTGGCCGGTGAAGTGCGCCCCGCCCCGCGTGGGCAAGAGCGCTTGAAGGAGGCCGCCAAACTGGGCTTCAGCGTGGCCGT
GGTGCCCAAGGCCAACGCGCCCAAGAAGCCCATCGAGGGTCTCACCATCCACGCCGTGGAGCGGGTGGAAGAGGCCATGA
ACGTGGTGCGTGGCCTGGTCTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-225)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

46.93

99.13

0.465
  radA Streptococcus pneumoniae Rx1

48.73

94.13

0.459
  radA Streptococcus pneumoniae D39

48.73

94.13

0.459
  radA Streptococcus pneumoniae R6

48.73

94.13

0.459
  radA Streptococcus pneumoniae TIGR4

48.73

94.13

0.459
  radA Streptococcus mitis SK321

48.73

94.13

0.459

Multiple sequence alignment