Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FEL01_RS06235 Genome accession   NZ_CP040307
Coordinates   1337917..1338522 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain F1 E4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1332917..1343522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL01_RS06205 (FEL01_06330) rsmS 1333619..1333783 (-) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -
  FEL01_RS06210 (FEL01_06335) priC 1333797..1334324 (-) 528 WP_000844886.1 primosomal replication protein N'' -
  FEL01_RS06215 (FEL01_06340) ybaN 1334394..1334771 (+) 378 WP_001188905.1 DUF454 family protein -
  FEL01_RS06220 (FEL01_06345) apt 1334924..1335475 (+) 552 WP_001301904.1 adenine phosphoribosyltransferase -
  FEL01_RS06225 (FEL01_06350) dnaX 1335604..1337535 (+) 1932 WP_000122006.1 DNA polymerase III subunit gamma/tau -
  FEL01_RS06230 (FEL01_06355) ybaB 1337588..1337917 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  FEL01_RS06235 (FEL01_06360) recR 1337917..1338522 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  FEL01_RS06240 (FEL01_06365) htpG 1338632..1340506 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  FEL01_RS06245 (FEL01_06370) adk 1340687..1341331 (+) 645 WP_001220233.1 adenylate kinase -
  FEL01_RS06250 (FEL01_06375) hemH 1341463..1342425 (+) 963 WP_001250105.1 ferrochelatase -
  FEL01_RS06255 (FEL01_06380) aes 1342422..1343381 (-) 960 WP_000801803.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=321064 FEL01_RS06235 WP_001195025.1 1337917..1338522(+) (recR) [Escherichia coli strain F1 E4]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=321064 FEL01_RS06235 WP_001195025.1 1337917..1338522(+) (recR) [Escherichia coli strain F1 E4]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCTACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment