Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   D9C22_RS07775 Genome accession   NZ_CP033064
Coordinates   1478779..1479057 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus sp. WR11     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1473779..1484057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9C22_RS07755 (D9C22_07760) - 1474967..1475878 (+) 912 WP_041850871.1 ketopantoate reductase family protein -
  D9C22_RS07760 (D9C22_07765) - 1475912..1477144 (-) 1233 WP_041850870.1 aminopeptidase -
  D9C22_RS07765 (D9C22_07770) - 1477253..1477387 (-) 135 WP_003238865.1 protein YkpC -
  D9C22_RS07770 (D9C22_07775) mreBH 1477488..1478495 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  D9C22_RS07775 (D9C22_07780) abrB 1478779..1479057 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  D9C22_RS07780 (D9C22_07785) kinC 1479247..1480533 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  D9C22_RS07785 (D9C22_07790) - 1480549..1481376 (+) 828 WP_041850869.1 gamma-glutamylcyclotransferase -
  D9C22_RS07790 (D9C22_07795) ktrC 1481439..1482104 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  D9C22_RS07795 (D9C22_07800) ade 1482260..1483993 (+) 1734 WP_041850868.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=321060 D9C22_RS07775 WP_003244728.1 1478779..1479057(+) (abrB) [Bacillus sp. WR11]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=321060 D9C22_RS07775 WP_003244728.1 1478779..1479057(+) (abrB) [Bacillus sp. WR11]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGGGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment