Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FEL06_RS21815 Genome accession   NZ_CP040305
Coordinates   4360324..4360839 (-) Length   171 a.a.
NCBI ID   WP_001130215.1    Uniprot ID   B5Z2A2
Organism   Escherichia coli strain HB6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4355324..4365839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEL06_RS21790 (FEL06_22455) ygaZ 4355723..4356460 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FEL06_RS21795 (FEL06_22460) ygaH 4356450..4356785 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  FEL06_RS21800 (FEL06_22465) emrR 4356876..4357406 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FEL06_RS21805 (FEL06_22470) emrA 4357533..4358705 (+) 1173 WP_001302673.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FEL06_RS21810 (FEL06_22475) emrB 4358722..4360260 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FEL06_RS21815 (FEL06_22480) luxS 4360324..4360839 (-) 516 WP_001130215.1 S-ribosylhomocysteine lyase Regulator
  FEL06_RS21820 (FEL06_22485) gshA 4360989..4362545 (-) 1557 WP_000611788.1 glutamate--cysteine ligase -
  FEL06_RS21825 (FEL06_22490) yqaA 4362618..4363046 (-) 429 WP_001287450.1 YqaA family protein -
  FEL06_RS21830 (FEL06_22495) yqaB 4363043..4363609 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FEL06_RS21860 (FEL06_22525) csrA 4364837..4365022 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19444.24 Da        Isoelectric Point: 5.0362

>NTDB_id=321015 FEL06_RS21815 WP_001130215.1 4360324..4360839(-) (luxS) [Escherichia coli strain HB6]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADVWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=321015 FEL06_RS21815 WP_001130215.1 4360324..4360839(-) (luxS) [Escherichia coli strain HB6]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGTCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATTCCGGAGCTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B5Z2A2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.515

100

0.725