Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   LLKF_RS09580 Genome accession   NC_013656
Coordinates   1981803..1982474 (-) Length   223 a.a.
NCBI ID   WP_012898326.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1976803..1987474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS09555 (LLKF_1913) pheA 1977108..1977947 (-) 840 WP_012898321.1 prephenate dehydratase -
  LLKF_RS09560 (LLKF_1914) - 1977949..1978437 (-) 489 WP_012898322.1 shikimate kinase -
  LLKF_RS09565 (LLKF_1915) aroA 1978461..1979753 (-) 1293 WP_012898323.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  LLKF_RS09570 (LLKF_1916) - 1979874..1980938 (-) 1065 WP_012898324.1 prephenate dehydrogenase -
  LLKF_RS09575 (LLKF_1917) - 1980941..1981816 (-) 876 WP_012898325.1 sensor histidine kinase -
  LLKF_RS09580 (LLKF_1918) braR 1981803..1982474 (-) 672 WP_012898326.1 response regulator transcription factor Regulator
  LLKF_RS09585 (LLKF_1919) - 1982477..1983541 (-) 1065 WP_012898327.1 VanZ family protein -
  LLKF_RS09590 (LLKF_1920) - 1983722..1985722 (-) 2001 WP_012898328.1 FtsX-like permease family protein -
  LLKF_RS09595 (LLKF_1921) - 1985715..1986494 (-) 780 WP_012898329.1 ABC transporter ATP-binding protein -
  LLKF_RS13620 (LLKF_1922) - 1986509..1986652 (-) 144 WP_012898330.1 hypothetical protein -
  LLKF_RS09600 (LLKF_1923) - 1986683..1987042 (-) 360 WP_012898331.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25522.50 Da        Isoelectric Point: 4.9092

>NTDB_id=32096 LLKF_RS09580 WP_012898326.1 1981803..1982474(-) (braR) [Lactococcus lactis subsp. lactis KF147]
MTKIFIVEDVEIIVRAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=32096 LLKF_RS09580 WP_012898326.1 1981803..1982474(-) (braR) [Lactococcus lactis subsp. lactis KF147]
ATGACTAAAATATTTATTGTAGAAGATGTAGAAATTATTGTGAGAGCAATTAAGATTGCTCTGGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCCATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCATTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACCCAAGAAGGTGAACGCGAAGAAATTGAGCTAACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.991

99.552

0.408

Multiple sequence alignment