Detailed information NTG0320950

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EST53_RS19545
• Genome accession: NZ_CP040269
• Coordinates: 4052523..4053515 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1500
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4047523..4058515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EST53_RS19515 (EST53_19515)	ispD	4047584..4048294 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EST53_RS19520 (EST53_19520)	ispF	4048294..4048773 (+)	480	WP_001219251.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EST53_RS19525 (EST53_19525)	truD	4048770..4049819 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EST53_RS19530 (EST53_19530)	surE	4049800..4050561 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EST53_RS19535 (EST53_19535)	pcm	4050555..4051181 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EST53_RS19540 (EST53_19540)	nlpD	4051366..4052460 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
EST53_RS19545 (EST53_19545)	rpoS	4052523..4053515 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EST53_RS19550 (EST53_19550)	-	4053636..4054043 (-)	408	WP_001208072.1	MarR family transcriptional regulator	-
EST53_RS19555 (EST53_19555)	-	4054190..4054783 (+)	594	WP_000767718.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
EST53_RS19560 (EST53_19560)	-	4054783..4056210 (+)	1428	WP_000863195.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
EST53_RS19565 (EST53_19565)	-	4056221..4056457 (+)	237	WP_000562984.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
EST53_RS19570 (EST53_19570)	ygbN	4056496..4057860 (-)	1365	WP_000104429.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=320950 EST53_RS19545 WP_000081550.1 4052523..4053515(+) (rpoS) [Escherichia coli strain 1500]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=320950 EST53_RS19545 WP_000081550.1 4052523..4053515(+) (rpoS) [Escherichia coli strain 1500]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715