Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9777_RS14865 Genome accession   NZ_CP033054
Coordinates   2953611..2954378 (-) Length   255 a.a.
NCBI ID   WP_007408287.1    Uniprot ID   A0AAP3YCF1
Organism   Bacillus velezensis strain Bac57     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2948611..2959378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS14845 - 2948814..2949626 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  D9777_RS14850 ccpN 2949651..2950289 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  D9777_RS14855 glyS 2950390..2952429 (-) 2040 WP_021494328.1 glycine--tRNA ligase subunit beta -
  D9777_RS14860 glyQ 2952422..2953309 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  D9777_RS14865 recO 2953611..2954378 (-) 768 WP_007408287.1 DNA repair protein RecO Machinery gene
  D9777_RS14870 - 2954415..2954558 (-) 144 WP_007408286.1 YqzL family protein -
  D9777_RS14875 era 2954714..2955619 (-) 906 WP_007408285.1 GTPase Era -
  D9777_RS14880 - 2955600..2956010 (-) 411 WP_017418172.1 cytidine deaminase -
  D9777_RS14885 - 2956134..2956508 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  D9777_RS14890 ybeY 2956489..2956962 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  D9777_RS14895 - 2956963..2959095 (-) 2133 WP_015387990.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29292.91 Da        Isoelectric Point: 8.5625

>NTDB_id=320948 D9777_RS14865 WP_007408287.1 2953611..2954378(-) (recO) [Bacillus velezensis strain Bac57]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=320948 D9777_RS14865 WP_007408287.1 2953611..2954378(-) (recO) [Bacillus velezensis strain Bac57]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACCTTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGGTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAACAGGAAA
CCAAAAACGAAATTAAACGGGTCATTGATCTGTATTACGAGGAATACTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89

Multiple sequence alignment