Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   D9777_RS14600 Genome accession   NZ_CP033054
Coordinates   2907308..2907574 (-) Length   88 a.a.
NCBI ID   WP_050496152.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bac57     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2902308..2912574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS14550 sinR 2902471..2902806 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  D9777_RS14555 - 2902854..2903639 (-) 786 WP_007408329.1 TasA family protein -
  D9777_RS14560 - 2903704..2904288 (-) 585 WP_012117977.1 signal peptidase I -
  D9777_RS14565 tapA 2904260..2904931 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  D9777_RS14570 - 2905190..2905519 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  D9777_RS14575 - 2905560..2905739 (-) 180 WP_003153093.1 YqzE family protein -
  D9777_RS14580 comGG 2905796..2906173 (-) 378 WP_021494310.1 competence type IV pilus minor pilin ComGG Machinery gene
  D9777_RS14585 comGF 2906174..2906569 (-) 396 WP_021494311.1 competence type IV pilus minor pilin ComGF -
  D9777_RS14590 comGE 2906583..2906897 (-) 315 WP_021494312.1 competence type IV pilus minor pilin ComGE Machinery gene
  D9777_RS14595 comGD 2906881..2907318 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  D9777_RS14600 comGC 2907308..2907574 (-) 267 WP_050496152.1 competence type IV pilus major pilin ComGC Machinery gene
  D9777_RS14605 comGB 2907621..2908658 (-) 1038 WP_021494313.1 competence type IV pilus assembly protein ComGB Machinery gene
  D9777_RS14610 comGA 2908645..2909715 (-) 1071 WP_014418378.1 competence type IV pilus ATPase ComGA Machinery gene
  D9777_RS14615 - 2909908..2910858 (-) 951 WP_014418379.1 magnesium transporter CorA family protein -
  D9777_RS14620 - 2911004..2912305 (+) 1302 WP_021494315.1 hemolysin family protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9740.36 Da        Isoelectric Point: 6.4456

>NTDB_id=320945 D9777_RS14600 WP_050496152.1 2907308..2907574(-) (comGC) [Bacillus velezensis strain Bac57]
MLIVLFIVSILLLITIPNVTKHNQSIQRKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIKKNTACPNGKQILIS
GGEVTVEQ

Nucleotide


Download         Length: 267 bp        

>NTDB_id=320945 D9777_RS14600 WP_050496152.1 2907308..2907574(-) (comGC) [Bacillus velezensis strain Bac57]
ATGCTGATTGTTTTATTTATCGTTTCCATTCTGCTTTTAATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCA
GCGTAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAGCCCAAGTGACGGCGTACGAAATCGACCATGAAGGTAAAATGC
CGGATATGAACGATTTACAATCAGAGGGGTATATCAAAAAGAATACAGCCTGTCCGAATGGTAAACAGATCTTAATTAGT
GGCGGAGAAGTTACAGTTGAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

73.611

81.818

0.602

Multiple sequence alignment