Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9777_RS13300 Genome accession   NZ_CP033054
Coordinates   2622566..2623174 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bac57     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2617566..2628174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS13260 - 2618619..2619125 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  D9777_RS13265 - 2619264..2619677 (+) 414 WP_017418017.1 hypothetical protein -
  D9777_RS13270 - 2619707..2620141 (-) 435 WP_021494224.1 YppG family protein -
  D9777_RS13275 - 2620328..2620510 (+) 183 WP_003153532.1 YppF family protein -
  D9777_RS13280 - 2620549..2620917 (-) 369 WP_017418019.1 YppE family protein -
  D9777_RS13285 - 2620963..2621208 (-) 246 WP_014418233.1 DUF5446 family protein -
  D9777_RS13290 sspM 2621414..2621518 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  D9777_RS13295 - 2621562..2622524 (-) 963 WP_031304204.1 DUF2515 domain-containing protein -
  D9777_RS13300 recU 2622566..2623174 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  D9777_RS13305 - 2623213..2625996 (+) 2784 WP_021494227.1 PBP1A family penicillin-binding protein -
  D9777_RS13310 - 2626074..2626565 (-) 492 WP_021494228.1 YpoC family protein -
  D9777_RS13315 nth 2626562..2627221 (-) 660 WP_007612187.1 endonuclease III -
  D9777_RS13320 dnaD 2627240..2627938 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=320937 D9777_RS13300 WP_031304205.1 2622566..2623174(+) (recU) [Bacillus velezensis strain Bac57]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=320937 D9777_RS13300 WP_031304205.1 2622566..2623174(+) (recU) [Bacillus velezensis strain Bac57]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAACATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment