Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D9777_RS08950 Genome accession   NZ_CP033054
Coordinates   1699682..1699966 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain Bac57     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1694682..1704966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS08925 - 1695926..1696834 (+) 909 WP_021493748.1 ketopantoate reductase family protein -
  D9777_RS08930 - 1696865..1698097 (-) 1233 WP_007409644.1 aminopeptidase -
  D9777_RS08935 - 1698198..1698332 (-) 135 WP_003154559.1 protein YkpC -
  D9777_RS08940 mreBH 1698404..1699411 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  D9777_RS08950 abrB 1699682..1699966 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  D9777_RS08955 - 1700139..1701443 (+) 1305 WP_014417634.1 ATP-binding protein -
  D9777_RS08960 - 1701445..1702272 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase family protein -
  D9777_RS08965 ktrC 1702313..1702978 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  D9777_RS08970 ade 1703127..1704860 (+) 1734 WP_021493747.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=320931 D9777_RS08950 WP_014417633.1 1699682..1699966(+) (abrB) [Bacillus velezensis strain Bac57]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=320931 D9777_RS08950 WP_014417633.1 1699682..1699966(+) (abrB) [Bacillus velezensis strain Bac57]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment