Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D9777_RS01430 Genome accession   NZ_CP033054
Coordinates   277099..277389 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain Bac57     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 272099..282389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9777_RS01390 darA 272116..272445 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  D9777_RS01395 - 272458..272898 (+) 441 WP_004264730.1 DUF327 family protein -
  D9777_RS01400 holB 272910..273899 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  D9777_RS01405 ricT 273902..274729 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  D9777_RS01410 yabA 274744..275103 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  D9777_RS01415 - 275164..275907 (+) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D9777_RS01420 - 275894..276193 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  D9777_RS01425 rsmI 276168..277049 (+) 882 WP_021494161.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D9777_RS01430 abrB 277099..277389 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  D9777_RS01435 metG 277872..279863 (+) 1992 WP_021494160.1 methionine--tRNA ligase -
  D9777_RS01440 - 279940..280707 (+) 768 WP_021494159.1 TatD family hydrolase -
  D9777_RS01445 - 280842..282167 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=320903 D9777_RS01430 WP_169510469.1 277099..277389(-) (abrB) [Bacillus velezensis strain Bac57]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=320903 D9777_RS01430 WP_169510469.1 277099..277389(-) (abrB) [Bacillus velezensis strain Bac57]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment