Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EST53_RS00560 Genome accession   NZ_CP040269
Coordinates   114265..115692 (-) Length   475 a.a.
NCBI ID   WP_000980580.1    Uniprot ID   A7ZNI3
Organism   Escherichia coli strain 1500     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 109265..120692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST53_RS00530 (EST53_00530) yeeZ 109320..110144 (+) 825 WP_000754762.1 SDR family oxidoreductase -
  EST53_RS00535 (EST53_00535) yeeY 110190..111119 (+) 930 WP_150391319.1 LysR substrate-binding domain-containing protein -
  EST53_RS00540 (EST53_00540) yoeI 111334..111396 (+) 63 WP_010723108.1 membrane protein YoeI -
  EST53_RS00545 (EST53_00545) plaP 111386..112744 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  EST53_RS00550 (EST53_00550) tsuA 112923..113981 (+) 1059 WP_023568741.1 thiosulfate utilization transporter TsuA/YeeE -
  EST53_RS00555 (EST53_00555) tsuB 113995..114222 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EST53_RS00560 (EST53_00560) sbcB 114265..115692 (-) 1428 WP_000980580.1 exodeoxyribonuclease I Machinery gene
  EST53_RS00565 (EST53_00565) dacD 115881..117047 (+) 1167 WP_053264463.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  EST53_RS00570 (EST53_00570) sbmC 117166..117639 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  EST53_RS00575 (EST53_00575) yeeA 117838..118896 (+) 1059 WP_001200891.1 FUSC family protein -
  EST53_RS00580 (EST53_00580) tmaR 119068..119397 (+) 330 WP_000450409.1 DUF496 family protein -
  EST53_RS00585 (EST53_00585) - 119498..119632 (-) 135 WP_001300152.1 EutP/PduV family microcompartment system protein -
  EST53_RS00590 (EST53_00590) cobU 119856..120401 (+) 546 WP_000973159.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54452.71 Da        Isoelectric Point: 5.6070

>NTDB_id=320882 EST53_RS00560 WP_000980580.1 114265..115692(-) (sbcB) [Escherichia coli strain 1500]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFNVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLIALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADNKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=320882 EST53_RS00560 WP_000980580.1 114265..115692(-) (sbcB) [Escherichia coli strain 1500]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTGCCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTAACGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATAGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGAGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCCGAGTTTTTACAAGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATAACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7ZNI3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581