Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   D9779_RS14305 Genome accession   NZ_CP033052
Coordinates   2744977..2745723 (-) Length   248 a.a.
NCBI ID   WP_121643007.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2739977..2750723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS14280 mreC 2740384..2741256 (-) 873 WP_121643004.1 rod shape-determining protein MreC -
  D9779_RS14285 mreB 2741287..2742300 (-) 1014 WP_010330269.1 cell shape-determining protein MreB -
  D9779_RS14290 radC 2742392..2743087 (-) 696 WP_121643005.1 RadC family protein -
  D9779_RS14295 - 2743124..2743693 (-) 570 WP_010330267.1 Maf family nucleotide pyrophosphatase -
  D9779_RS14300 - 2743845..2744843 (-) 999 WP_121643006.1 SPOR domain-containing protein -
  D9779_RS14305 comC 2744977..2745723 (-) 747 WP_121643007.1 prepilin peptidase Machinery gene
  D9779_RS14310 - 2745861..2747153 (-) 1293 WP_121643008.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  D9779_RS14315 valS 2747213..2749855 (-) 2643 WP_121643009.1 valine--tRNA ligase -
  D9779_RS14320 - 2750303..2750494 (+) 192 WP_010330262.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26302.84 Da        Isoelectric Point: 9.7540

>NTDB_id=320878 D9779_RS14305 WP_121643007.1 2744977..2745723(-) (comC) [Bacillus vallismortis strain Bac111]
MLPILFILGLILGSFYYTAGCRIPLHKSIVKPRSACSFCQQPLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGSSLELFPAVVFISLLIMAAVTDIHFMLIPNKILIFFLPFLGAARLISPLDSWYAGLLGAAAGFVFLALF
AAITGGGIGGGDIKLFAVIGFVLGMKMLAAAFFFSVLIGALYGSAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKIALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=320878 D9779_RS14305 WP_121643007.1 2744977..2745723(-) (comC) [Bacillus vallismortis strain Bac111]
ATGCTCCCCATTCTTTTTATTCTCGGGCTGATCCTTGGTTCGTTTTATTATACGGCCGGCTGCCGTATCCCCTTGCATAA
ATCTATTGTCAAACCCCGTTCGGCATGCTCGTTTTGCCAGCAGCCATTAACTCCAGCAGAATTAATTCCCATCCTGTCAT
TTCTATTCCAAAAAGGAAAATGTAAAAGCTGCGGGCATAGAATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCTCGTCTTTGGAGCTGTTTCCCGCTGTCGTGTTTATCTCTCTTCTGAT
CATGGCAGCAGTGACAGATATTCATTTTATGCTGATTCCAAATAAAATATTGATTTTCTTTCTTCCCTTTTTGGGTGCTG
CCAGATTGATTTCTCCGCTTGATTCCTGGTATGCCGGTCTGTTAGGTGCGGCTGCCGGATTTGTATTTCTGGCTTTATTT
GCGGCAATCACCGGTGGCGGAATAGGAGGAGGAGATATTAAATTATTTGCGGTCATTGGCTTTGTGCTAGGTATGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCCGTTTTAATAGGTGCATTGTATGGATCGGCAGCTGTCCTGACTGGAAGACTCGCCA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCAATTGCGGCTGGGAGTATTTTAGCCTATTTATACGGCGACTCTATTATTTCT
TTTTATATAAAGATAGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

90.726

100

0.907

Multiple sequence alignment