Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   D9779_RS13380 Genome accession   NZ_CP033052
Coordinates   2577313..2578080 (-) Length   255 a.a.
NCBI ID   WP_121642923.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2572313..2583080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS13360 - 2572487..2573299 (-) 813 WP_003237056.1 pyruvate, water dikinase regulatory protein -
  D9779_RS13365 ccpN 2573325..2573963 (-) 639 WP_026014545.1 transcriptional regulator CcpN -
  D9779_RS13370 glyS 2574096..2576135 (-) 2040 WP_121642922.1 glycine--tRNA ligase subunit beta -
  D9779_RS13375 glyQ 2576128..2577015 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  D9779_RS13380 recO 2577313..2578080 (-) 768 WP_121642923.1 DNA repair protein RecO Machinery gene
  D9779_RS13385 - 2578117..2578260 (-) 144 WP_010330697.1 YqzL family protein -
  D9779_RS13390 era 2578404..2579309 (-) 906 WP_010330698.1 GTPase Era -
  D9779_RS13395 - 2579290..2579700 (-) 411 WP_010330699.1 cytidine deaminase -
  D9779_RS13400 - 2579821..2580192 (-) 372 WP_121642924.1 diacylglycerol kinase family protein -
  D9779_RS13405 ybeY 2580173..2580646 (-) 474 WP_010330701.1 rRNA maturation RNase YbeY -
  D9779_RS13410 pgpH 2580647..2582779 (-) 2133 WP_121642925.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29351.08 Da        Isoelectric Point: 8.5552

>NTDB_id=320872 D9779_RS13380 WP_121642923.1 2577313..2578080(-) (recO) [Bacillus vallismortis strain Bac111]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKVGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSLRG
IREDLFLTAYAAYITELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVIIFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSIRDNGFICHRCFEKDPYRVPIKPQTARLLRLFYYFDLSRLGNVSLKQETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=320872 D9779_RS13380 WP_121642923.1 2577313..2578080(-) (recO) [Bacillus vallismortis strain Bac111]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTTACTTTACTGACAAG
AGAACACGGAAAAGTAGGTGTGATGGCCAGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGCTCGTTCTTAATGCAAAAAACATCCGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCTTGAGAGGT
ATCAGGGAAGATCTGTTTTTAACAGCATATGCTGCTTATATCACCGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
GAACCCTTATTTGTTTGAATTCATTTTAGAATCGCTCAAACAGCTGAATGAAGGAACTGACCCGGACGTTATCATCTTTA
TCGTTCAAATGAAAATGCTCGGTGTCATGGGGCTGTATCCCGAGCTCAATCACTGTGTGCATTGTAAAAGCCAGGATGGG
ACCTTTCATTTTTCTATCCGTGATAATGGTTTTATTTGCCACCGCTGTTTTGAAAAAGATCCTTACAGGGTTCCGATTAA
ACCGCAAACAGCAAGGCTGTTGAGACTGTTTTATTACTTTGATTTATCGAGGCTGGGCAATGTGTCCTTAAAACAGGAAA
CAAAAGCTGAATTGAAGCAAGTGATTGATTTATATTATGAAGAATACTCAGGGTTATATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAGAGTATGAAACATCTTATGGGCGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

96.863

100

0.969

Multiple sequence alignment