Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   D9779_RS11820 Genome accession   NZ_CP033052
Coordinates   2298002..2298622 (+) Length   206 a.a.
NCBI ID   WP_010330548.1    Uniprot ID   A0AAP3FV80
Organism   Bacillus vallismortis strain Bac111     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2293002..2303622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS11775 - 2293202..2293621 (+) 420 WP_010330555.1 Hsp20/alpha crystallin family protein -
  D9779_RS11780 - 2293639..2294010 (-) 372 WP_010330554.1 YppG family protein -
  D9779_RS11785 - 2294196..2294384 (+) 189 WP_010330553.1 YppF family protein -
  D9779_RS11790 - 2294539..2295891 (+) 1353 WP_121642517.1 IS1182 family transposase -
  D9779_RS11800 - 2296009..2296380 (-) 372 WP_121642781.1 YppE family protein -
  D9779_RS11805 - 2296426..2296671 (-) 246 WP_010330551.1 DUF5446 family protein -
  D9779_RS11810 sspM 2296870..2296974 (+) 105 WP_010330550.1 acid-soluble spore protein SspM -
  D9779_RS11815 - 2296999..2297961 (-) 963 WP_082246376.1 DUF2515 domain-containing protein -
  D9779_RS11820 recU 2298002..2298622 (+) 621 WP_010330548.1 Holliday junction resolvase RecU Machinery gene
  D9779_RS11825 - 2298644..2301382 (+) 2739 WP_121642782.1 transglycosylase domain-containing protein -
  D9779_RS11830 - 2301450..2301944 (-) 495 WP_010330545.1 YpoC family protein -
  D9779_RS11835 nth 2301941..2302600 (-) 660 WP_010330544.1 endonuclease III -
  D9779_RS11840 dnaD 2302619..2303317 (-) 699 WP_010330543.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23928.04 Da        Isoelectric Point: 9.4046

>NTDB_id=320860 D9779_RS11820 WP_010330548.1 2298002..2298622(+) (recU) [Bacillus vallismortis strain Bac111]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVMAQDGICFVIISAFDQVYFLEADKLFDFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=320860 D9779_RS11820 WP_010330548.1 2298002..2298622(+) (recU) [Bacillus vallismortis strain Bac111]
ATGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
CTACAGTAATCGAGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTCA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCCAAAAGAAGTGCCGCAGTGATAAAAGAAGCTTAC
TTCAAACAATCATCAACGACAGATTATAACGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACAAAAAA
CAAGACCTCTTTCCCCTTGCAGAATTTTCATGATCATCAAATCGAACATATGAAGCAGGTAATGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAACTGTTTGATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAATTAGAGGAAGCGGCGTATCCGATTTCTCTTGGATACGCACCTAGAAT
TGATTATATTAGTATTATAGAACAGCTTTATTTTTCGCCGTCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

97.573

100

0.976

Multiple sequence alignment