Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   D9779_RS09580 Genome accession   NZ_CP033052
Coordinates   1860952..1861845 (+) Length   297 a.a.
NCBI ID   WP_010331112.1    Uniprot ID   A0AAP3FU34
Organism   Bacillus vallismortis strain Bac111     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1855952..1866845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS09560 - 1856612..1858351 (+) 1740 WP_121642563.1 hypothetical protein -
  D9779_RS09565 - 1858348..1858629 (+) 282 WP_010331114.1 FlhB-like flagellar biosynthesis protein -
  D9779_RS09570 sucC 1858803..1859960 (+) 1158 WP_039073947.1 ADP-forming succinate--CoA ligase subunit beta -
  D9779_RS09575 sucD 1859989..1860891 (+) 903 WP_121642564.1 succinate--CoA ligase subunit alpha -
  D9779_RS09580 dprA 1860952..1861845 (+) 894 WP_010331112.1 DNA-processing protein DprA Machinery gene
  D9779_RS09585 topA 1862032..1864107 (+) 2076 WP_010331111.1 type I DNA topoisomerase -
  D9779_RS09590 trmFO 1864183..1865490 (+) 1308 WP_010331110.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  D9779_RS09595 xerC 1865557..1866471 (+) 915 WP_010331109.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32922.29 Da        Isoelectric Point: 9.6986

>NTDB_id=320856 D9779_RS09580 WP_010331112.1 1860952..1861845(+) (dprA) [Bacillus vallismortis strain Bac111]
MDQAAACLMICRINQLLSPSLLLKWWKADASMSLTSPVLETVTRDKEKAAALKNKIEEHYPKLQRVLAAYRGQGIIPIPI
SSKQYPFWLKTIYDPPAVLFAKGDMALLSQGRKIGIVGTRNPTAYGIHVVNHLTKELCRKEWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=320856 D9779_RS09580 WP_010331112.1 1860952..1861845(+) (dprA) [Bacillus vallismortis strain Bac111]
TTGGATCAGGCCGCTGCCTGTTTAATGATCTGCAGAATCAATCAACTATTATCCCCATCTCTTCTATTAAAATGGTGGAA
AGCCGATGCATCTATGTCGCTGACATCACCTGTTTTAGAAACTGTTACTCGCGATAAAGAAAAGGCAGCTGCATTAAAGA
ACAAAATTGAAGAACATTATCCAAAGCTTCAGCGTGTACTTGCTGCTTACCGTGGGCAAGGCATTATCCCCATCCCGATT
TCTTCTAAACAATATCCTTTCTGGCTGAAAACGATTTATGATCCCCCCGCCGTCCTGTTTGCAAAGGGTGATATGGCCCT
TCTTTCTCAAGGGAGGAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGATACATGTTGTTAACCACCTTA
CAAAAGAGCTTTGCCGCAAAGAGTGGGTGATTGTCAGCGGGCTGGCGTCTGGGATAGACGGAATGTCCCATGCGGCAAGC
ATTAAGGCGAAGGGGCGGACAATCGGCGTTATTGCAGGGGGATTTCAACACATTTATCCCCGCGAAAACCTTCAGTTAGC
AGATCACATGGCGAAACACCATATCCTTCTGTCAGAGCATCCACCTGAAACGAAACCCCAAAAATGGCATTTTCCTATGA
GAAATCGTATCATCAGCGGATTAAGTGAAGGCGTTATTGTCGTGCAGGGCAAAGAAAAAAGCGGTTCTCTGATTACTGCA
TATCAAGCACTGGAACAAGGGAGAGAAGTTTTTGCCGTACCCGGTTCATTATTTGATCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAGCTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

93.266

100

0.933
  dprA Streptococcus mutans UA159

44.898

82.492

0.37

Multiple sequence alignment