Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D9779_RS08740 Genome accession   NZ_CP033052
Coordinates   1694779..1695057 (+) Length   92 a.a.
NCBI ID   WP_003238863.1    Uniprot ID   A0A9Q4EYY4
Organism   Bacillus vallismortis strain Bac111     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1689779..1700057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS08720 - 1690968..1691879 (+) 912 WP_121642499.1 ketopantoate reductase family protein -
  D9779_RS08725 - 1691909..1693141 (-) 1233 WP_121642500.1 aminopeptidase -
  D9779_RS08730 - 1693253..1693387 (-) 135 WP_003238865.1 protein YkpC -
  D9779_RS08735 mreBH 1693488..1694495 (-) 1008 WP_010328464.1 cell shape-determining protein MreBH -
  D9779_RS08740 abrB 1694779..1695057 (+) 279 WP_003238863.1 transcriptional regulator AbhA Regulator
  D9779_RS08745 kinC 1695246..1696532 (+) 1287 WP_121642501.1 two-component sensor histidine kinase KinC -
  D9779_RS08750 - 1696546..1697373 (+) 828 WP_121643728.1 gamma-glutamylcyclotransferase -
  D9779_RS08755 ktrC 1697445..1698110 (+) 666 WP_010328461.1 Ktr system potassium transporter KtrC -
  D9779_RS08760 ade 1698268..1700001 (+) 1734 WP_121642502.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=320855 D9779_RS08740 WP_003238863.1 1694779..1695057(+) (abrB) [Bacillus vallismortis strain Bac111]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSDNKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=320855 D9779_RS08740 WP_003238863.1 1694779..1695057(+) (abrB) [Bacillus vallismortis strain Bac111]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAGTTAGGGCGTATTGTCATGCCGATCGAATTAAGACGGGCATTGGA
TATTGCGATAAAAGACAGCATTGAGTTTTTTGTTGACGGGGATAAAATTATCTTGAAAAAGTATAAACCTCATGGGGTTT
GTTTAATGACCGGAGAAATCACTTCAGATAATAAAGAATACGGCAATGGTAAGATTACGTTAAGCCCTGAGGGGGCACAG
CTGCTTCTCGAAGAAATCCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)

AbrB C-terminal domain (AbrB_C)

(53-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

59.341

98.913

0.587

Multiple sequence alignment