Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EST51_RS18530 Genome accession   NZ_CP040263
Coordinates   3767621..3768226 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain 631     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3762621..3773226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST51_RS18510 (EST51_18500) aes 3762762..3763721 (+) 960 WP_000764314.1 acetyl esterase -
  EST51_RS18515 (EST51_18505) hemH 3763718..3764680 (-) 963 WP_001250117.1 ferrochelatase -
  EST51_RS18520 (EST51_18510) adk 3764812..3765456 (-) 645 WP_001220233.1 adenylate kinase -
  EST51_RS18525 (EST51_18515) htpG 3765637..3767511 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  EST51_RS18530 (EST51_18520) recR 3767621..3768226 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EST51_RS18535 (EST51_18525) ybaB 3768226..3768555 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EST51_RS18540 (EST51_18530) dnaX 3768608..3770539 (-) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EST51_RS18545 (EST51_18535) apt 3770668..3771219 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EST51_RS18550 (EST51_18540) ybaN 3771372..3771749 (-) 378 WP_001188905.1 DUF454 family protein -
  EST51_RS18555 (EST51_18545) priC 3771819..3772346 (+) 528 WP_001522038.1 primosomal replication protein N'' -
  EST51_RS18560 (EST51_18550) rsmS 3772360..3772524 (+) 165 WP_000051143.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=320854 EST51_RS18530 WP_001195025.1 3767621..3768226(-) (recR) [Escherichia coli strain 631]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=320854 EST51_RS18530 WP_001195025.1 3767621..3768226(-) (recR) [Escherichia coli strain 631]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACTGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment