Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   D9779_RS06610 Genome accession   NZ_CP033052
Coordinates   1294582..1295160 (+) Length   192 a.a.
NCBI ID   WP_010329287.1    Uniprot ID   A0AAP3CGP7
Organism   Bacillus vallismortis strain Bac111     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1289582..1300160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS21030 - 1290094..1290609 (-) 516 WP_371864110.1 methyl-accepting chemotaxis protein -
  D9779_RS21035 - 1290898..1291275 (-) 378 Protein_1224 protoglobin domain-containing protein -
  D9779_RS06595 - 1291530..1293059 (-) 1530 WP_121642265.1 FAD-dependent oxidoreductase -
  D9779_RS06600 - 1293171..1294028 (+) 858 WP_010329285.1 SDR family oxidoreductase -
  D9779_RS06605 - 1294056..1294289 (-) 234 WP_039073470.1 IDEAL domain-containing protein -
  D9779_RS06610 comK 1294582..1295160 (+) 579 WP_010329287.1 competence transcription factor ComK Regulator
  D9779_RS06615 - 1295210..1296109 (-) 900 WP_010329288.1 SDR family oxidoreductase -
  D9779_RS06620 - 1296315..1296584 (+) 270 WP_121642266.1 excalibur calcium-binding domain-containing protein -
  D9779_RS06625 - 1296631..1298100 (-) 1470 WP_121642267.1 sodium:solute symporter family protein -
  D9779_RS06630 - 1298097..1298297 (-) 201 WP_121642268.1 DUF3311 domain-containing protein -
  D9779_RS06635 - 1298520..1298882 (-) 363 WP_010329292.1 hypothetical protein -
  D9779_RS06640 - 1299034..1299657 (+) 624 WP_082022488.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22354.63 Da        Isoelectric Point: 7.6610

>NTDB_id=320843 D9779_RS06610 WP_010329287.1 1294582..1295160(+) (comK) [Bacillus vallismortis strain Bac111]
MSQKTDAPLESYEVNGATIAVLPEEVDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKTMELPISCNSFENQVYRTAWLRTKFQDRVEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=320843 D9779_RS06610 WP_010329287.1 1294582..1295160(+) (comK) [Bacillus vallismortis strain Bac111]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCTGTGCTGCCAGAAGAAGTCGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGACTGCGTGTTTTACGTCAGCATGAAACCGCTGCAAATTGTCGACAGAA
GCTGCCGGTTTTTTGGATCAAGCTATGCGGGAAGAAAAGCTGGAACTTATGAAGTAACAAAAATTTCACACAAACCGCCG
ATCATGGTCGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTGAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAACGGGAAAACGATGGAGCTGC
CGATCTCCTGTAATTCGTTCGAGAACCAGGTGTACCGGACAGCATGGCTCAGAACCAAATTCCAAGACAGAGTCGAACAC
CGCGTGCCGAAACGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGGGA
GTTGGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

96.875

100

0.969

Multiple sequence alignment