Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   D9779_RS02825 Genome accession   NZ_CP033052
Coordinates   527740..528189 (-) Length   149 a.a.
NCBI ID   WP_121641864.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 522740..533189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS02790 - 523402..524538 (+) 1137 WP_121641860.1 zinc-dependent alcohol dehydrogenase -
  D9779_RS02795 - 524551..525006 (+) 456 WP_010330225.1 RDD family protein -
  D9779_RS02800 - 525088..525420 (+) 333 WP_121641861.1 YckD family protein -
  D9779_RS02805 - 525549..525971 (+) 423 WP_039075886.1 MarR family winged helix-turn-helix transcriptional regulator -
  D9779_RS02810 - 525959..526300 (+) 342 WP_121641862.1 DUF3147 family protein -
  D9779_RS02815 - 526312..527040 (+) 729 WP_121641863.1 AAA family ATPase -
  D9779_RS20650 - 527178..527281 (+) 104 Protein_506 hypothetical protein -
  D9779_RS02820 nin/comJ 527318..527716 (-) 399 WP_003224919.1 DNA-entry nuclease inhibitor Regulator
  D9779_RS02825 nucA/comI 527740..528189 (-) 450 WP_121641864.1 DNA-entry nuclease Machinery gene
  D9779_RS02830 tlpC 528366..530087 (-) 1722 WP_121641865.1 methyl-accepting chemotaxis protein TlpC -
  D9779_RS02835 hxlB 530199..530756 (-) 558 WP_121641866.1 6-phospho-3-hexuloisomerase -
  D9779_RS02840 hxlA 530761..531393 (-) 633 WP_010330234.1 3-hexulose-6-phosphate synthase -
  D9779_RS02845 hxlR 531623..531985 (+) 363 WP_010330235.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16406.31 Da        Isoelectric Point: 4.3043

>NTDB_id=320833 D9779_RS02825 WP_121641864.1 527740..528189(-) (nucA/comI) [Bacillus vallismortis strain Bac111]
MNITMDIIKTILLVIVVIAAAAVGLIKGDFFSADQKTSQTNEYDETIALPSDRYPETAKHIEDAINEGHSDVCTIDRDGA
EERREQSLKDVPPKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIR

Nucleotide


Download         Length: 450 bp        

>NTDB_id=320833 D9779_RS02825 WP_121641864.1 527740..528189(-) (nucA/comI) [Bacillus vallismortis strain Bac111]
GTGAACATCACGATGGACATCATAAAAACGATACTTCTCGTCATCGTCGTCATAGCAGCTGCAGCTGTCGGCCTGATCAA
GGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAATGAATATGACGAAACAATCGCCCTCCCTTCGGACCGTT
ATCCCGAAACGGCAAAACATATTGAGGATGCGATAAATGAGGGGCACTCAGATGTATGCACCATCGACAGAGACGGCGCT
GAGGAACGCCGCGAGCAATCATTAAAAGACGTACCTCCTAAAACGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCAGTAGAATATATTTCTCCCGCAGACAACCGCGGTGCAGGCTCCTGGGTCGGGCATC
AGCTTACCGATTATCCAGACGGCACAAAGGTTTTATTCACCATTCGGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.617

100

0.926

Multiple sequence alignment