Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D9779_RS00970 Genome accession   NZ_CP033052
Coordinates   180684..180968 (-) Length   94 a.a.
NCBI ID   WP_039076459.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 175684..185968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS00930 darA 175707..176036 (+) 330 WP_003218295.1 cyclic di-AMP receptor DarA -
  D9779_RS00935 - 176049..176489 (+) 441 WP_039076465.1 YaaR family protein -
  D9779_RS00940 holB 176501..177490 (+) 990 WP_121641672.1 DNA polymerase III subunit delta' -
  D9779_RS00945 ricT 177493..178320 (+) 828 WP_003242158.1 competence/sporulation regulator complex protein RicT -
  D9779_RS00950 yabA 178335..178694 (+) 360 WP_039076463.1 replication initiation-control protein YabA -
  D9779_RS00955 - 178753..179496 (+) 744 WP_121641673.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D9779_RS00960 - 179483..179782 (+) 300 WP_121641674.1 GIY-YIG nuclease family protein -
  D9779_RS00965 rsmI 179757..180635 (+) 879 WP_121641675.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D9779_RS00970 abrB 180684..180968 (-) 285 WP_039076459.1 transition state genes transcriptional regulator AbrB Regulator
  D9779_RS00975 metG 181470..183464 (+) 1995 WP_121641676.1 methionine--tRNA ligase -
  D9779_RS00980 - 183543..184310 (+) 768 WP_121641677.1 TatD family hydrolase -
  D9779_RS00985 - 184466..185779 (+) 1314 WP_121641678.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10551.30 Da        Isoelectric Point: 6.3482

>NTDB_id=320828 D9779_RS00970 WP_039076459.1 180684..180968(-) (abrB) [Bacillus vallismortis strain Bac111]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSKEGAE
QIISEIQNQLQNLK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=320828 D9779_RS00970 WP_039076459.1 180684..180968(-) (abrB) [Bacillus vallismortis strain Bac111]
ATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAGTTGCGTCGTACTCTTGG
AATCGCAGAAAAAGATGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACATGACTT
GCCAAGTAACAGGTGAAGTTTCTGATGATAATCTTAAACTTGCTAACGGTAAATTGGTTCTTAGTAAAGAAGGCGCTGAA
CAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

98.936

100

0.989

Multiple sequence alignment