Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   D9779_RS00745 Genome accession   NZ_CP033052
Coordinates   139165..140277 (+) Length   370 a.a.
NCBI ID   WP_121641658.1    Uniprot ID   -
Organism   Bacillus vallismortis strain Bac111     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 134165..145277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9779_RS00720 rnpA 134883..135233 (-) 351 WP_003242628.1 ribonuclease P protein component -
  D9779_RS00725 rpmH 135384..135518 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  D9779_RS00730 dnaA 136140..137480 (+) 1341 WP_039074864.1 chromosomal replication initiator protein DnaA -
  D9779_RS00735 dnaN 137666..138802 (+) 1137 WP_039074863.1 DNA polymerase III subunit beta -
  D9779_RS00740 rlbA 138934..139149 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  D9779_RS00745 recF 139165..140277 (+) 1113 WP_121641658.1 DNA replication/repair protein RecF Machinery gene
  D9779_RS00750 remB 140295..140540 (+) 246 WP_039074861.1 extracellular matrix regulator RemB -
  D9779_RS00755 gyrB 140596..142512 (+) 1917 WP_039074860.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  D9779_RS00760 gyrA 142723..145188 (+) 2466 WP_121641659.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42410.38 Da        Isoelectric Point: 7.1294

>NTDB_id=320826 D9779_RS00745 WP_121641658.1 139165..140277(+) (recF) [Bacillus vallismortis strain Bac111]
MYIQNLELTSYRNYDHTELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVASKVVVKRLQFTAQLEKWAQPIHTGISRGLEELTLKYHTALEVSDPEDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=320826 D9779_RS00745 WP_121641658.1 139165..140277(+) (recF) [Bacillus vallismortis strain Bac111]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATACTGAACTCCAATTTGAAAACAAAGTAAATGT
CATCATCGGAGAAAACGCCCAGGGGAAAACAAATCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAGTCGCATCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAACCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAATACCATCATGTTCGCACCGGAAGATTTAAATCTGGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTCGACATGGAAATCGGACAGGTTTCCCCTGTCTATCTGCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGA
AATCATTTTTTGAAGCAGCTGCAAACAAGAAAACAAACTGACAGAACAATGCTCGATGTCTTGACCGATCAGCTTGTAGA
AGTTGCGTCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCGCAGCTCGAAAAATGGGCACAGCCTATTCATACGGGGA
TCTCAAGAGGGCTTGAAGAGCTGACCCTGAAGTACCATACGGCTCTTGAGGTATCAGATCCTGAAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCCTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTGTTACGCTTTCAGGGCCTCATCG
TGACGATGTCCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACAACGGCATTGT
CCCTTAAACTGGCGGAGATTGACCTGATCCATGAGGAAATAGGAGAATATCCCATTTTACTATTGGATGATGTATTAAGT
GAGCTGGATGATTATCGCCAGTCGCACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAGAACGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

98.649

100

0.986

Multiple sequence alignment