Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EST51_RS06225 Genome accession   NZ_CP040263
Coordinates   1251542..1252057 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 631     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1246542..1257057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST51_RS06180 (EST51_06175) csrA 1247357..1247542 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EST51_RS06210 (EST51_06205) yqaB 1248772..1249338 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EST51_RS06215 (EST51_06210) yqaA 1249335..1249763 (+) 429 WP_001287454.1 YqaA family protein -
  EST51_RS06220 (EST51_06215) gshA 1249836..1251392 (+) 1557 WP_001551535.1 glutamate--cysteine ligase -
  EST51_RS06225 (EST51_06220) luxS 1251542..1252057 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EST51_RS06230 (EST51_06225) emrB 1252121..1253659 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EST51_RS06235 (EST51_06230) emrA 1253676..1254848 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EST51_RS06240 (EST51_06235) emrR 1254975..1255505 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EST51_RS06245 (EST51_06240) ygaH 1255596..1255931 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  EST51_RS06250 (EST51_06245) ygaZ 1255921..1256658 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=320824 EST51_RS06225 WP_001130211.1 1251542..1252057(+) (luxS) [Escherichia coli strain 631]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=320824 EST51_RS06225 WP_001130211.1 1251542..1252057(+) (luxS) [Escherichia coli strain 631]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731