Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | D9778_RS15210 | Genome accession | NZ_CP033049 |
| Coordinates | 2954770..2956143 (-) | Length | 457 a.a. |
| NCBI ID | WP_121615947.1 | Uniprot ID | - |
| Organism | Virgibacillus halodenitrificans strain Bac324 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2949770..2961143
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D9778_RS15195 | cysE | 2950644..2951312 (-) | 669 | WP_060681876.1 | serine O-acetyltransferase | - |
| D9778_RS15200 | gltX | 2951757..2953226 (-) | 1470 | WP_071648023.1 | glutamate--tRNA ligase | - |
| D9778_RS15205 | - | 2953429..2954526 (-) | 1098 | WP_019375558.1 | PIN/TRAM domain-containing protein | - |
| D9778_RS15210 | radA | 2954770..2956143 (-) | 1374 | WP_121615947.1 | DNA repair protein RadA | Machinery gene |
| D9778_RS15215 | - | 2957181..2958296 (-) | 1116 | WP_121614688.1 | IS110 family transposase | - |
Sequence
Protein
Download Length: 457 a.a. Molecular weight: 49863.36 Da Isoelectric Point: 7.3040
>NTDB_id=320808 D9778_RS15210 WP_121615947.1 2954770..2956143(-) (radA) [Virgibacillus halodenitrificans strain Bac324]
MAKRKTKYVCQECGYESAKWMGKCPGCNNWNTLMEEVAATGGRGNHTFNVGGKPAGKPESITSIESQKEPRITTTMKEFN
RVLGGGIVLGSLVLIGGDPGIGKSTLLLQISSQLAEKQLPVLYISGEESTRQTKLRADRLGIKADQLYVLAETNLFDIAK
QIEEVKPSLVVVDSIQTVYREEVTSAPGSVSQVRESTSELMKIAKTNGIPIFIVGHVTKEGAIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPSAFG
NPRRMATGIDNNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAVAVSIASSFRDQPTNPEDIFVGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLEGWTIPKNIEVVGVSTVQEALDIGVSR
MAKRKTKYVCQECGYESAKWMGKCPGCNNWNTLMEEVAATGGRGNHTFNVGGKPAGKPESITSIESQKEPRITTTMKEFN
RVLGGGIVLGSLVLIGGDPGIGKSTLLLQISSQLAEKQLPVLYISGEESTRQTKLRADRLGIKADQLYVLAETNLFDIAK
QIEEVKPSLVVVDSIQTVYREEVTSAPGSVSQVRESTSELMKIAKTNGIPIFIVGHVTKEGAIAGPRLLEHMVDAVLYFE
GERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPSAFG
NPRRMATGIDNNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAVAVSIASSFRDQPTNPEDIFVGEVGLTG
EIRRVSRIEQRVQEAAKLGFKRVICPKNNLEGWTIPKNIEVVGVSTVQEALDIGVSR
Nucleotide
Download Length: 1374 bp
>NTDB_id=320808 D9778_RS15210 WP_121615947.1 2954770..2956143(-) (radA) [Virgibacillus halodenitrificans strain Bac324]
TTGGCAAAAAGAAAAACAAAGTATGTATGTCAAGAATGTGGTTATGAATCAGCTAAATGGATGGGGAAATGTCCGGGATG
TAACAACTGGAATACGTTAATGGAAGAAGTTGCAGCAACTGGCGGGCGAGGTAACCATACATTCAATGTTGGTGGAAAAC
CTGCAGGGAAACCAGAAAGTATTACTTCCATTGAATCACAAAAGGAACCGAGAATTACTACGACCATGAAGGAATTTAAT
CGGGTACTTGGGGGCGGAATTGTTCTGGGCTCTCTTGTATTAATTGGTGGGGACCCTGGGATTGGGAAATCTACCTTGCT
ACTTCAGATTTCTTCCCAATTGGCAGAGAAGCAATTACCAGTTCTTTATATATCGGGCGAGGAATCTACAAGACAAACAA
AGCTACGTGCCGATCGGTTAGGAATTAAGGCTGATCAGCTATATGTCCTTGCTGAAACGAACTTATTCGATATCGCTAAG
CAGATTGAAGAAGTAAAGCCTTCTCTAGTAGTTGTCGATTCGATCCAAACAGTTTATCGAGAAGAGGTAACAAGCGCGCC
AGGAAGTGTTTCACAAGTTCGAGAGTCTACAAGTGAATTGATGAAAATAGCGAAAACAAACGGAATACCAATTTTTATTG
TTGGTCATGTTACAAAGGAGGGCGCAATTGCTGGCCCGCGCTTATTGGAACACATGGTGGATGCAGTCCTATATTTTGAA
GGGGAGCGGCACCATACCTACCGTATCCTGAGGGGAGTAAAGAATCGTTTCGGAAGTACAAACGAAATGGGGATTTTTGA
AATGAAAGAGGAAGGGCTTCGTGAAGTAATGAATCCTTCTGAAATTTTTCTGGAGGAAAGATCTCAAGGAGCTGCTGGCT
CTACCGTTGTAGCTTCTATGGAAGGAACGAGACCTGTGTTGGTAGAAATTCAGGCTTTAATTTCTCCTTCCGCGTTTGGT
AATCCAAGAAGGATGGCTACTGGCATTGATAATAATCGCGTCCCTTTATTAATGGCTGTACTGGAAAAAAGAGTAGGGCT
TATGCTGCAAAATCAGGATGCATATATAAAAGTAGCTGGCGGAGTTAAATTAGATGAGCCGGCAATTGACTTGGCAGTAG
CAGTGAGTATTGCTTCAAGCTTTAGGGATCAACCCACGAATCCTGAAGATATATTCGTTGGTGAAGTAGGGTTAACAGGT
GAAATAAGAAGAGTATCCCGAATTGAACAACGTGTTCAAGAAGCTGCAAAACTAGGATTTAAACGTGTGATATGCCCAAA
GAATAATCTTGAAGGCTGGACGATACCGAAGAATATTGAAGTAGTTGGTGTTAGTACGGTGCAGGAAGCACTGGATATAG
GTGTGAGCAGATAG
TTGGCAAAAAGAAAAACAAAGTATGTATGTCAAGAATGTGGTTATGAATCAGCTAAATGGATGGGGAAATGTCCGGGATG
TAACAACTGGAATACGTTAATGGAAGAAGTTGCAGCAACTGGCGGGCGAGGTAACCATACATTCAATGTTGGTGGAAAAC
CTGCAGGGAAACCAGAAAGTATTACTTCCATTGAATCACAAAAGGAACCGAGAATTACTACGACCATGAAGGAATTTAAT
CGGGTACTTGGGGGCGGAATTGTTCTGGGCTCTCTTGTATTAATTGGTGGGGACCCTGGGATTGGGAAATCTACCTTGCT
ACTTCAGATTTCTTCCCAATTGGCAGAGAAGCAATTACCAGTTCTTTATATATCGGGCGAGGAATCTACAAGACAAACAA
AGCTACGTGCCGATCGGTTAGGAATTAAGGCTGATCAGCTATATGTCCTTGCTGAAACGAACTTATTCGATATCGCTAAG
CAGATTGAAGAAGTAAAGCCTTCTCTAGTAGTTGTCGATTCGATCCAAACAGTTTATCGAGAAGAGGTAACAAGCGCGCC
AGGAAGTGTTTCACAAGTTCGAGAGTCTACAAGTGAATTGATGAAAATAGCGAAAACAAACGGAATACCAATTTTTATTG
TTGGTCATGTTACAAAGGAGGGCGCAATTGCTGGCCCGCGCTTATTGGAACACATGGTGGATGCAGTCCTATATTTTGAA
GGGGAGCGGCACCATACCTACCGTATCCTGAGGGGAGTAAAGAATCGTTTCGGAAGTACAAACGAAATGGGGATTTTTGA
AATGAAAGAGGAAGGGCTTCGTGAAGTAATGAATCCTTCTGAAATTTTTCTGGAGGAAAGATCTCAAGGAGCTGCTGGCT
CTACCGTTGTAGCTTCTATGGAAGGAACGAGACCTGTGTTGGTAGAAATTCAGGCTTTAATTTCTCCTTCCGCGTTTGGT
AATCCAAGAAGGATGGCTACTGGCATTGATAATAATCGCGTCCCTTTATTAATGGCTGTACTGGAAAAAAGAGTAGGGCT
TATGCTGCAAAATCAGGATGCATATATAAAAGTAGCTGGCGGAGTTAAATTAGATGAGCCGGCAATTGACTTGGCAGTAG
CAGTGAGTATTGCTTCAAGCTTTAGGGATCAACCCACGAATCCTGAAGATATATTCGTTGGTGAAGTAGGGTTAACAGGT
GAAATAAGAAGAGTATCCCGAATTGAACAACGTGTTCAAGAAGCTGCAAAACTAGGATTTAAACGTGTGATATGCCCAAA
GAATAATCTTGAAGGCTGGACGATACCGAAGAATATTGAAGTAGTTGGTGTTAGTACGGTGCAGGAAGCACTGGATATAG
GTGTGAGCAGATAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
74.449 |
99.344 |
0.74 |
| radA | Streptococcus pneumoniae Rx1 |
62.306 |
98.687 |
0.615 |
| radA | Streptococcus pneumoniae D39 |
62.306 |
98.687 |
0.615 |
| radA | Streptococcus pneumoniae R6 |
62.306 |
98.687 |
0.615 |
| radA | Streptococcus pneumoniae TIGR4 |
62.306 |
98.687 |
0.615 |
| radA | Streptococcus mitis NCTC 12261 |
62.306 |
98.687 |
0.615 |
| radA | Streptococcus mitis SK321 |
62.084 |
98.687 |
0.613 |