Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9778_RS13965 Genome accession   NZ_CP033049
Coordinates   2721890..2722843 (-) Length   317 a.a.
NCBI ID   WP_019379135.1    Uniprot ID   A0AAC9IXI3
Organism   Virgibacillus halodenitrificans strain Bac324     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2716890..2727843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9778_RS13935 - 2717442..2718167 (-) 726 WP_060681850.1 SurA N-terminal domain-containing protein -
  D9778_RS13950 - 2718911..2719891 (-) 981 WP_121615841.1 siderophore ABC transporter substrate-binding protein -
  D9778_RS13955 - 2720201..2720956 (-) 756 WP_019379137.1 ABC transporter ATP-binding protein -
  D9778_RS13960 - 2720950..2721900 (-) 951 WP_019379136.1 iron chelate uptake ABC transporter family permease subunit -
  D9778_RS13965 ceuB 2721890..2722843 (-) 954 WP_019379135.1 ABC transporter permease Machinery gene
  D9778_RS13970 - 2723217..2723936 (-) 720 WP_060681614.1 DsbA family oxidoreductase -
  D9778_RS13975 - 2724025..2724891 (-) 867 WP_121615842.1 MBL fold metallo-hydrolase -
  D9778_RS13980 - 2724985..2725440 (-) 456 WP_019379132.1 DUF2188 domain-containing protein -
  D9778_RS13985 fni 2725521..2726576 (-) 1056 WP_019379131.1 type 2 isopentenyl-diphosphate Delta-isomerase -
  D9778_RS13990 - 2726866..2727405 (+) 540 WP_121615843.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34930.20 Da        Isoelectric Point: 9.9551

>NTDB_id=320807 D9778_RS13965 WP_019379135.1 2721890..2722843(-) (ceuB) [Virgibacillus halodenitrificans strain Bac324]
MKIRYLVTVLIILSIISVFTGVSSVSILDIFSLTEDQIQILTVSRLPRLVSILIAGMSMSICGLIMQQLSKNKFVSPTTS
GTLDSARLGILVSMMIFTSASPFQKMFVSFIFALLGTFIFMKILEKVKFKDAIFIPLIGLMFGNIISSISTFFAYKNDLI
QNLSSWMQGDFSMIMSGNYELMFVSIPILGLAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLVIVALVTASVVLAVGM
IPFLGLIIPNIVTIYQGDHLKKSLIHTALLGAIFVMACDIIGRVIIYPYEIPISLTVGVIGSGVFIYLLLRRKKYGL

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320807 D9778_RS13965 WP_019379135.1 2721890..2722843(-) (ceuB) [Virgibacillus halodenitrificans strain Bac324]
ATGAAAATCCGTTACTTAGTTACAGTACTTATTATCTTATCAATTATATCCGTTTTTACTGGTGTCTCCAGTGTGTCTAT
ATTAGATATTTTTTCTTTAACAGAAGATCAAATACAAATATTAACAGTAAGTAGACTTCCCAGACTAGTAAGCATTCTAA
TTGCTGGAATGAGCATGAGTATCTGTGGATTGATTATGCAGCAGCTTAGTAAGAACAAGTTTGTTTCACCTACAACGTCT
GGAACATTGGATTCTGCGAGGCTGGGAATACTTGTTTCGATGATGATCTTTACATCCGCAAGCCCTTTCCAAAAAATGTT
CGTATCCTTTATCTTCGCTTTACTTGGTACGTTTATTTTTATGAAAATACTTGAAAAAGTTAAATTCAAGGATGCTATTT
TTATCCCATTAATCGGACTGATGTTTGGAAATATCATAAGTTCTATTTCTACTTTTTTTGCATATAAGAATGACCTGATT
CAAAATTTGTCATCATGGATGCAAGGCGATTTTTCAATGATTATGAGTGGGAATTATGAATTGATGTTCGTAAGTATACC
GATTTTAGGTCTCGCGTTTTTTTATGCGAACAAATTTACCATTGCCGGGATGGGGGAAGATTTTTCCAAAAACCTTGGTT
TGAATTATCGGCAGGTAGTGAATTTAGGTTTAGTTATCGTAGCACTTGTAACCGCATCAGTTGTATTGGCGGTTGGTATG
ATTCCGTTTTTAGGATTAATTATCCCGAACATTGTCACAATATACCAGGGCGACCACTTGAAGAAAAGTCTGATACATAC
AGCATTGCTGGGGGCAATATTTGTAATGGCATGTGATATTATCGGCAGGGTAATCATTTATCCATATGAAATCCCAATCA
GTTTAACGGTCGGGGTGATAGGTAGTGGCGTGTTCATCTACCTATTATTAAGGAGAAAGAAATATGGATTATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539

Multiple sequence alignment