Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   FED54_RS16465 Genome accession   NZ_CP040259
Coordinates   3413670..3414776 (-) Length   368 a.a.
NCBI ID   WP_001187342.1    Uniprot ID   A0ABX6CGL8
Organism   Acinetobacter baumannii strain P7774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3408670..3419776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS16435 (FED54_16435) - 3408790..3410376 (+) 1587 WP_000622647.1 cytochrome ubiquinol oxidase subunit I -
  FED54_RS16440 (FED54_16440) cydB 3410373..3411518 (+) 1146 WP_000575160.1 cytochrome d ubiquinol oxidase subunit II -
  FED54_RS16445 (FED54_16445) cydX 3411532..3411633 (+) 102 WP_000270276.1 cytochrome bd-I oxidase subunit CydX -
  FED54_RS16450 (FED54_16450) - 3411634..3411933 (+) 300 WP_085916945.1 cyd operon YbgE family protein -
  FED54_RS16455 (FED54_16455) - 3411991..3412662 (-) 672 WP_000175347.1 DUF2057 domain-containing protein -
  FED54_RS16460 (FED54_16460) - 3412887..3413483 (-) 597 WP_000102943.1 nitroreductase family protein -
  FED54_RS16465 (FED54_16465) pilA 3413670..3414776 (-) 1107 WP_001187342.1 signal recognition particle-docking protein FtsY Machinery gene
  FED54_RS16470 (FED54_16470) - 3414884..3415210 (-) 327 WP_000955083.1 hypothetical protein -
  FED54_RS16475 (FED54_16475) - 3415311..3415670 (-) 360 WP_000185571.1 hypothetical protein -
  FED54_RS16480 (FED54_16480) - 3415886..3416119 (+) 234 WP_000616034.1 hypothetical protein -
  FED54_RS16490 (FED54_16490) - 3416555..3416929 (+) 375 WP_001087274.1 DUF2750 domain-containing protein -
  FED54_RS16495 (FED54_16495) - 3417070..3417501 (+) 432 WP_000156920.1 CBS domain-containing protein -
  FED54_RS16500 (FED54_16500) - 3417553..3418761 (-) 1209 WP_000129944.1 aspartate aminotransferase family protein -
  FED54_RS16505 (FED54_16505) grxD 3418989..3419330 (+) 342 WP_000138830.1 Grx4 family monothiol glutaredoxin -
  FED54_RS16510 (FED54_16510) - 3419377..3419700 (-) 324 WP_000121850.1 hypothetical protein -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 39919.72 Da        Isoelectric Point: 4.9872

>NTDB_id=320791 FED54_RS16465 WP_001187342.1 3413670..3414776(-) (pilA) [Acinetobacter baumannii strain P7774]
MQQQSNMQNKFLIDAEIGDDDVTLPNLPAIDVPIVESPVKQEVKAEEVVEAAPSTEPEQPKSGFFGRMKEGLSKTRRNFT
DGMVNILIGGKEIDDELLEEVEEQLLVADIGVDATKTIITNLTERTARGDLIYSHSLYKALQEELVALLAPRVKPLHIDP
NKSPYVILMVGVNGVGKTTTIGKLAKRLQGEGKKVMLAAGDTFRAAATEQLQIWGERNDIAVVAQGHGADSASVIFDAFE
SARAKGIDVLIADTAGRLHNKSNLMEELKKVKRVMQKIDATAPHEIMLVVDAGTGQNAINQVQEFDQAVGLTGITITKLD
GTAKGGVLFNIASRTHVPIRFIGVGEKIDDLRPFSAKSFVAALFETEK

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=320791 FED54_RS16465 WP_001187342.1 3413670..3414776(-) (pilA) [Acinetobacter baumannii strain P7774]
ATGCAACAACAATCGAATATGCAAAATAAATTCTTGATAGATGCTGAGATCGGGGATGACGATGTCACATTGCCTAATTT
ACCTGCTATCGATGTTCCTATCGTTGAGTCACCTGTTAAGCAAGAAGTAAAAGCTGAAGAAGTGGTCGAGGCTGCACCTT
CTACAGAACCTGAGCAACCAAAATCTGGTTTCTTTGGGCGAATGAAAGAAGGCTTGAGCAAAACTCGTCGTAATTTCACC
GATGGGATGGTTAATATCTTAATTGGTGGGAAAGAAATTGATGATGAGTTGCTTGAAGAAGTCGAAGAGCAATTATTAGT
TGCAGATATTGGTGTTGATGCAACAAAAACGATTATTACCAACTTAACTGAACGTACTGCTCGTGGTGATTTGATCTATT
CACATTCACTTTATAAAGCCTTGCAAGAAGAGTTAGTTGCTTTGCTTGCTCCACGTGTGAAGCCTTTGCATATTGACCCT
AATAAATCACCTTATGTGATTTTAATGGTTGGGGTAAATGGTGTTGGAAAAACAACAACAATTGGTAAATTAGCGAAGCG
TTTACAAGGTGAAGGCAAAAAAGTGATGTTGGCGGCAGGTGATACATTCCGTGCTGCTGCTACTGAACAATTGCAAATCT
GGGGTGAGCGTAACGATATTGCTGTAGTTGCTCAAGGTCATGGTGCCGATAGTGCATCAGTTATTTTTGATGCTTTTGAA
AGTGCGCGAGCTAAAGGTATTGATGTACTGATTGCAGATACTGCGGGCCGTTTGCATAACAAAAGTAATTTGATGGAAGA
GCTTAAGAAAGTTAAGCGTGTTATGCAAAAAATTGATGCAACAGCGCCTCATGAAATTATGTTGGTTGTAGATGCGGGTA
CTGGGCAAAATGCAATCAACCAAGTACAAGAATTTGACCAGGCTGTCGGTTTAACAGGTATTACCATTACTAAGTTGGAT
GGTACAGCAAAAGGTGGAGTATTATTTAATATTGCTAGTCGTACTCATGTGCCAATTCGTTTCATTGGTGTGGGTGAAAA
AATTGATGATTTAAGACCATTCTCGGCGAAATCGTTTGTTGCAGCACTATTTGAAACTGAAAAATAA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(83-145)

SRP54-type protein, GTPase domain (SRP54)

(165-364)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

52.038

86.685

0.451