Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9778_RS05925 Genome accession   NZ_CP033049
Coordinates   1211074..1212801 (-) Length   575 a.a.
NCBI ID   WP_121615033.1    Uniprot ID   -
Organism   Virgibacillus halodenitrificans strain Bac324     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1206074..1217801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9778_RS05905 - 1206690..1206920 (+) 231 WP_019378284.1 DUF2627 domain-containing protein -
  D9778_RS05910 - 1207081..1208427 (+) 1347 WP_019378283.1 aspartate kinase -
  D9778_RS05915 spo0A 1208539..1209318 (-) 780 WP_121615032.1 sporulation transcription factor Spo0A -
  D9778_RS05920 spoIVB 1209581..1210840 (-) 1260 WP_121616523.1 SpoIVB peptidase -
  D9778_RS05925 recN 1211074..1212801 (-) 1728 WP_121615033.1 DNA repair protein RecN Machinery gene
  D9778_RS05930 ahrC 1212831..1213280 (-) 450 WP_019378278.1 transcriptional regulator AhrC/ArgR -
  D9778_RS05935 - 1213318..1214151 (-) 834 WP_019378277.1 TlyA family RNA methyltransferase -
  D9778_RS05940 - 1214169..1214750 (-) 582 WP_019378276.1 hypothetical protein -
  D9778_RS05945 - 1215433..1216317 (-) 885 WP_019378275.1 polyprenyl synthetase family protein -
  D9778_RS05950 - 1216318..1216551 (-) 234 WP_019378274.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 575 a.a.        Molecular weight: 65775.55 Da        Isoelectric Point: 5.1685

>NTDB_id=320790 D9778_RS05925 WP_121615033.1 1211074..1212801(-) (recN) [Virgibacillus halodenitrificans strain Bac324]
MLTELSIHDFAIIEDISITFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGTKKAEIEGLFIIDSDTHPIYKV
GKEYGIEISDKQIVLQRTITANGKSICRVNSKLVTLAILREFGKTLIDIHSQHETQSLMNPEHHIDLLDMYDAGQIRKTK
QEYRELFNKLLSLKNRYKKLSENEQEMAHRLDLLQFQLKEIEQADLAPDEDQNLEEERDSLVNYERIYQALQDGYNALYG
EQRGLEWVNKAQVALQSAATYDKFIEEKAEAISNHYYALEELTYELRNYTEMQQYSPSRLNELEGRLNEISRLKKKYGAT
VNEILEYMGKVEEEIEEITNKDSHLSKLDEEIKELEKDAYLEARQLHDLRKKAANSLTANIHKELKGLYLEKASFAISFG
EVDGYNEEKLPLHKNGFDQIRFLISTNTGEPLKELNKIASGGELSRIMLVLKKIFFRHQGVTSVIFDEVDTGVSGRVAQA
IAEKIYQISQASQVLCITHLPQVASMADTHKFIKKLEKNQRTFTSVSELTIEEQIDELSRMITGTKLTETAKEHGKEMLE
LANHYKEQNNTDKFM

Nucleotide


Download         Length: 1728 bp        

>NTDB_id=320790 D9778_RS05925 WP_121615033.1 1211074..1212801(-) (recN) [Virgibacillus halodenitrificans strain Bac324]
TTGTTAACAGAACTATCTATTCATGACTTCGCGATTATTGAAGATATATCTATAACGTTTAATGAAGGATTAACGGTTCT
AACTGGTGAGACTGGTGCTGGGAAATCCATTATTATTGATGCAGTGCAGTTATTGGCTGGCGGCAGAGGATCTGTCGAAT
TTGTGAGACATGGAACTAAGAAAGCGGAGATTGAAGGTTTATTCATTATTGATTCTGACACCCATCCCATTTATAAAGTA
GGAAAAGAATATGGTATAGAAATATCTGATAAGCAGATTGTGTTACAACGCACTATTACTGCCAACGGGAAGAGTATATG
CAGGGTAAATAGTAAATTAGTTACACTTGCAATATTGAGGGAGTTTGGAAAGACACTAATTGATATTCACAGTCAGCATG
AAACGCAGTCGCTTATGAATCCTGAACATCATATCGACTTACTTGATATGTATGATGCAGGTCAAATTAGAAAAACTAAA
CAAGAATATCGTGAACTTTTTAATAAACTTTTATCCCTCAAAAACCGCTATAAGAAATTAAGTGAAAATGAACAGGAAAT
GGCCCATCGGTTAGATCTTCTTCAATTCCAACTTAAGGAAATTGAACAAGCAGATCTAGCCCCTGATGAAGATCAGAACT
TGGAAGAAGAAAGAGATTCCTTGGTTAATTATGAACGTATTTATCAAGCTTTACAGGATGGCTACAATGCTTTGTATGGA
GAGCAACGAGGGCTGGAATGGGTTAATAAAGCTCAGGTGGCGCTACAATCCGCTGCTACATATGATAAATTTATTGAAGA
AAAAGCTGAAGCAATCTCTAATCACTATTATGCTTTAGAGGAATTAACTTATGAACTACGGAATTATACAGAAATGCAAC
AATACTCCCCAAGCAGGTTGAATGAACTTGAGGGTAGATTAAACGAAATCAGCCGATTGAAAAAGAAATATGGTGCTACG
GTAAATGAAATTCTGGAATATATGGGAAAAGTAGAAGAGGAAATCGAAGAAATAACTAACAAAGATTCACACTTGTCTAA
GTTGGATGAGGAAATAAAGGAATTAGAAAAAGATGCATATTTAGAAGCAAGACAATTACATGATTTACGAAAAAAAGCAG
CCAATTCTCTAACTGCAAATATTCATAAAGAATTAAAAGGATTATATTTAGAAAAAGCCTCATTTGCGATTTCGTTTGGA
GAGGTTGATGGTTATAATGAAGAAAAGCTTCCTCTTCATAAAAATGGTTTCGATCAAATACGGTTTTTAATTTCAACAAA
TACAGGTGAACCGCTTAAAGAATTGAACAAAATTGCTTCCGGTGGAGAGCTTTCCAGAATAATGCTTGTTCTTAAAAAGA
TTTTTTTCAGACACCAAGGTGTTACAAGTGTTATTTTTGATGAAGTGGATACAGGAGTTAGTGGCAGGGTTGCACAAGCC
ATTGCTGAAAAAATATATCAAATATCACAAGCTTCGCAAGTACTGTGTATTACACACTTACCACAGGTAGCATCGATGGC
AGATACCCACAAATTTATTAAAAAACTTGAAAAAAACCAGCGCACTTTCACATCTGTCTCGGAGCTTACAATTGAGGAAC
AAATTGATGAACTTAGCAGAATGATAACCGGCACTAAGTTAACCGAGACTGCAAAAGAACATGGAAAAGAGATGCTTGAA
TTAGCAAATCATTATAAAGAGCAAAATAATACGGATAAATTTATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(5-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.136

99.826

0.53

Multiple sequence alignment