Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   LLKF_RS06455 Genome accession   NC_013656
Coordinates   1329954..1331009 (-) Length   351 a.a.
NCBI ID   WP_012897829.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis KF147     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1324954..1336009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLKF_RS06440 (LLKF_1275) trmFO 1326640..1327983 (+) 1344 WP_012897827.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LLKF_RS06445 (LLKF_1276) xerS 1328028..1329098 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  LLKF_RS06450 (LLKF_1277) - 1329583..1329870 (-) 288 WP_012897828.1 hypothetical protein -
  LLKF_RS06455 (LLKF_1278) xerS 1329954..1331009 (-) 1056 WP_012897829.1 tyrosine recombinase XerS Machinery gene
  LLKF_RS06460 - 1331503..1331793 (+) 291 WP_041167909.1 hypothetical protein -
  LLKF_RS06465 (LLKF_1279) - 1331857..1332678 (-) 822 WP_012897830.1 dihydrodipicolinate synthase family protein -
  LLKF_RS06470 (LLKF_1280) - 1332770..1333972 (-) 1203 WP_012897831.1 MFS transporter -
  LLKF_RS06475 (LLKF_1281) - 1333944..1334645 (-) 702 WP_012897832.1 B3/4 domain-containing protein -
  LLKF_RS06480 (LLKF_1282) - 1334664..1335197 (-) 534 WP_012897833.1 GNAT family N-acetyltransferase -
  LLKF_RS06485 (LLKF_1283) - 1335198..1335653 (-) 456 WP_012897834.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40586.02 Da        Isoelectric Point: 8.5355

>NTDB_id=32079 LLKF_RS06455 WP_012897829.1 1329954..1331009(-) (xerS) [Lactococcus lactis subsp. lactis KF147]
MSENNGYQYNVNKLMLEFPNYVNEYIQSKRVVPLSEASIYEYCLDFRKYLQWLLDGSITNHNQIKEITLQELENVTKHEL
EDFVLHERLRLESKCGSNAHTSALNRTIAAIKSLYNYLSEQTEDEHGNTYMTRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKDFLEFVEHNYENSVSNRARTSFKKNKIRDLAILSLFLSSGLRCAELVGINLDDLNLEAGKVSVMRKEGKKDVVP
IAQFSHKYINDYFVIRSSIDTEIQAFFITDYDQKIRKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALNKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=32079 LLKF_RS06455 WP_012897829.1 1329954..1331009(-) (xerS) [Lactococcus lactis subsp. lactis KF147]
ATGTCAGAAAACAACGGTTATCAATACAATGTTAATAAACTAATGCTAGAATTTCCAAATTATGTTAACGAATATATTCA
ATCGAAAAGAGTTGTTCCGCTGAGTGAAGCGTCAATATATGAATATTGCTTAGACTTTAGAAAGTACCTCCAATGGCTCC
TTGATGGTAGTATAACAAATCATAATCAAATCAAAGAAATTACCTTGCAAGAATTAGAAAATGTAACCAAACATGAATTG
GAGGACTTTGTGTTACATGAGAGACTACGTTTGGAATCTAAATGTGGGTCAAATGCACATACTTCAGCATTAAATCGCAC
AATTGCAGCGATTAAGAGCTTATATAATTATTTAAGTGAGCAAACTGAAGATGAACATGGAAATACATACATGACCAGAA
ATGTCAGTCGTTTAATTCATATCCGAAAAAAAAGCGAGACCTTGCATTACCGTGCGGCTCAACTGGAAGGTAAACTATTC
CTTGGAGACGAAACCAAAGACTTTTTAGAATTTGTTGAACATAACTATGAAAATTCTGTCAGTAACCGTGCGAGAACAAG
TTTCAAGAAAAATAAAATCAGAGATTTAGCTATATTAAGTCTTTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GGATCAATCTTGACGATTTAAACCTTGAAGCTGGGAAAGTAAGTGTGATGCGAAAAGAGGGAAAAAAAGACGTTGTCCCA
ATTGCCCAGTTTTCACACAAATATATAAATGATTATTTTGTGATAAGAAGTAGCATAGATACTGAAATACAAGCCTTTTT
CATAACAGATTACGACCAAAAAATAAGAAAAATCTCTAACGCTTCAATAAATAAGCTAGTGGCGAAGTATTCAGAAGCCT
ATAAAGTTCGTGTGACACCTCATACACTAAGACATACATTCGCAACGAGGCTCTATAATGTCAGTCACTCCCAAGTACTT
GTCAGCAATCAATTAGGGCATTCATCAACTAAACCTACAGAACTATATACCCACATTGTCAGTGCTGAAGCTAAAGATGC
ATTAAACAAGTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(186-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.845

99.43

0.456

Multiple sequence alignment