Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BCB4264_RS09855 Genome accession   NC_011725
Coordinates   1915027..1915314 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus B4264     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1910027..1920314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCB4264_RS09835 (BCB4264_A1998) - 1911200..1911397 (+) 198 WP_001048091.1 DUF4083 domain-containing protein -
  BCB4264_RS09840 (BCB4264_A1999) - 1911429..1911890 (+) 462 WP_000024999.1 NUDIX hydrolase -
  BCB4264_RS09845 (BCB4264_A2000) nadE 1911940..1912758 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  BCB4264_RS09850 (BCB4264_A2001) - 1913029..1914909 (+) 1881 WP_001025986.1 ABC transporter permease -
  BCB4264_RS09855 (BCB4264_A2002) abrB 1915027..1915314 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BCB4264_RS09860 (BCB4264_A2003) - 1915590..1916537 (+) 948 WP_000099748.1 serine protease -
  BCB4264_RS09865 (BCB4264_A2004) - 1916579..1916887 (-) 309 WP_001259906.1 helix-turn-helix transcriptional regulator -
  BCB4264_RS09870 (BCB4264_A2005) - 1916994..1917929 (+) 936 WP_000877960.1 aldo/keto reductase -
  BCB4264_RS09875 (BCB4264_A2006) - 1917977..1919152 (+) 1176 WP_001082493.1 MFS transporter -
  BCB4264_RS09880 (BCB4264_A2007) - 1919447..1919671 (-) 225 WP_000162602.1 hypothetical protein -
  BCB4264_RS09885 (BCB4264_A2008) - 1919756..1920103 (-) 348 WP_000426317.1 DUF4257 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=32076 BCB4264_RS09855 WP_000648324.1 1915027..1915314(+) (abrB) [Bacillus cereus B4264]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=32076 BCB4264_RS09855 WP_000648324.1 1915027..1915314(+) (abrB) [Bacillus cereus B4264]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment