Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9780_RS07470 Genome accession   NZ_CP033048
Coordinates   1602095..1603816 (+) Length   573 a.a.
NCBI ID   WP_116277001.1    Uniprot ID   A0A3E0WXP7
Organism   Virgibacillus sp. Bac330     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1597095..1608816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS07445 - 1598271..1598501 (+) 231 WP_073004335.1 exodeoxyribonuclease VII small subunit -
  D9780_RS07450 - 1598504..1599388 (+) 885 WP_371413711.1 polyprenyl synthetase family protein -
  D9780_RS07455 - 1600086..1600661 (+) 576 WP_121639753.1 hypothetical protein -
  D9780_RS07460 - 1600681..1601508 (+) 828 WP_121639754.1 TlyA family RNA methyltransferase -
  D9780_RS07465 ahrC 1601623..1602072 (+) 450 WP_073004330.1 transcriptional regulator AhrC/ArgR -
  D9780_RS07470 recN 1602095..1603816 (+) 1722 WP_116277001.1 DNA repair protein RecN Machinery gene
  D9780_RS07475 spoIVB 1604120..1605316 (+) 1197 WP_073004327.1 SpoIVB peptidase -
  D9780_RS07480 spo0A 1605702..1606478 (+) 777 WP_073004325.1 sporulation transcription factor Spo0A -
  D9780_RS07485 - 1606545..1607894 (-) 1350 WP_121639755.1 aspartate kinase -
  D9780_RS07490 - 1608051..1608302 (-) 252 WP_073004322.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 65357.97 Da        Isoelectric Point: 5.0425

>NTDB_id=320757 D9780_RS07470 WP_116277001.1 1602095..1603816(+) (recN) [Virgibacillus sp. Bac330]
MLTELSIQDFAIINKLSVTFNEGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRHGAKKADIEGLFTLDHESHPVYTI
CEQYGIESEDQQLVLRRTITANGKSICRVNSKLVTLAVLREFGRTLIDIHSQHETQSLMNPEHHLDLLDLYQPELINKAK
KEYLKLYDQLSKLKNRYRKLSENEQETAQRLDLLQFQLRELEEAQLQPNEDEQLEEEKNTLVNFERIYSSLQLAYNSLYG
EQKGLDWVNQAQIALQDNSNYDASLAQKAEDIANYYYGLEELTHDLGNQIETLQFDPERLNEIEARLNEINRLKRKYGPT
VSDMLTYMAKIEEEVEEISNKDSHISKLEQQIKEKAKDAFLEAQELRDIRKKAAKALTKEIHEELKDLYLEKTEFQVQFA
ENIEPQEEPENHLHKNGMDDVTFLISTNPGEPPKPLNKVASGGELSRIMLSLKKIFAKHQGVTSVIFDEVDTGVSGRVAQ
AIAEKIYHISQKSQVLCITHLPQVAAMADTHKLIEKEVTNQRTSTTVYELSQKAQINELARMITGTKLTESAVNHAREML
EMVIQFKGKEHNL

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=320757 D9780_RS07470 WP_116277001.1 1602095..1603816(+) (recN) [Virgibacillus sp. Bac330]
GTGCTTACGGAATTGTCTATTCAGGATTTTGCGATAATCAACAAGCTTTCCGTTACTTTTAATGAAGGATTAACCGTTTT
AACAGGTGAAACGGGAGCTGGTAAATCCATTATTATTGATGCGGTTCAATTGCTCGCTGGAGGTAGAGGTTCTGTTGAAT
TTGTCCGTCACGGTGCTAAAAAGGCAGATATTGAAGGTTTATTTACTTTGGACCATGAATCACACCCTGTATATACCATT
TGTGAGCAGTATGGCATTGAAAGTGAAGACCAGCAACTTGTGCTTAGACGCACTATAACAGCAAATGGGAAAAGTATTTG
TCGGGTTAATAGCAAATTAGTAACTTTAGCTGTCCTGCGTGAATTTGGAAGGACATTAATTGATATTCATAGTCAGCACG
AAACACAGTCCCTTATGAATCCTGAGCATCATTTAGATTTGTTGGATTTATACCAGCCTGAATTAATTAATAAGGCGAAA
AAAGAATACTTGAAATTATATGACCAATTATCTAAACTAAAAAATCGTTATCGTAAATTGAGTGAAAATGAACAAGAAAC
AGCTCAACGATTAGATTTGTTGCAATTCCAGTTGCGGGAATTGGAAGAAGCTCAATTACAACCTAATGAAGACGAGCAAT
TGGAAGAGGAAAAGAATACTTTAGTTAATTTTGAACGTATTTATTCATCCTTACAGCTTGCTTACAATTCTCTTTATGGC
GAACAGAAAGGGCTTGATTGGGTAAATCAGGCGCAAATAGCATTGCAAGATAACAGTAATTATGACGCTTCTCTAGCACA
AAAAGCAGAAGATATTGCAAATTATTACTATGGGTTAGAAGAATTGACCCATGACTTAGGAAATCAAATTGAAACGTTGC
AATTTGACCCAGAACGCCTAAATGAAATTGAAGCTCGTTTAAATGAAATTAATCGTTTAAAAAGAAAATATGGTCCTACG
GTTTCGGATATGTTGACTTATATGGCAAAGATAGAAGAAGAAGTAGAAGAAATAAGCAATAAAGATTCTCATATATCTAA
ACTCGAACAACAAATAAAAGAAAAAGCCAAGGATGCTTTTTTGGAAGCTCAAGAATTGCGTGATATCCGAAAAAAAGCGG
CAAAAGCTTTGACGAAGGAAATTCATGAGGAATTAAAAGACCTTTACTTAGAAAAGACGGAATTTCAGGTTCAGTTTGCT
GAGAATATAGAACCACAAGAAGAGCCAGAGAATCATTTGCATAAAAATGGAATGGATGATGTGACATTTTTGATTTCCAC
CAATCCAGGTGAACCTCCCAAACCTTTAAATAAAGTAGCTTCTGGAGGAGAATTGTCTCGGATTATGTTAAGTTTGAAGA
AAATATTTGCTAAACATCAAGGTGTTACAAGTGTCATTTTTGATGAAGTAGATACTGGAGTAAGCGGTAGAGTGGCACAA
GCGATTGCTGAAAAAATATATCACATCTCACAAAAGTCACAAGTTTTATGCATTACACATCTACCCCAAGTCGCAGCTAT
GGCTGATACACATAAATTAATTGAGAAAGAGGTAACAAATCAACGAACATCCACCACTGTTTATGAATTAAGCCAAAAAG
CGCAAATTAATGAACTTGCTCGAATGATTACAGGTACAAAGCTTACAGAATCAGCGGTGAATCATGCTAGAGAGATGTTA
GAAATGGTGATTCAATTTAAAGGAAAAGAGCATAATTTATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E0WXP7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

54.878

100

0.55

Multiple sequence alignment