Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D9780_RS03770 Genome accession   NZ_CP033048
Coordinates   861383..863191 (+) Length   602 a.a.
NCBI ID   WP_121639337.1    Uniprot ID   -
Organism   Virgibacillus sp. Bac330     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 856383..868191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9780_RS03750 - 856597..857181 (+) 585 WP_073010764.1 GNAT family N-acetyltransferase -
  D9780_RS03755 spxA 858062..858457 (+) 396 WP_073010767.1 transcriptional regulator SpxA -
  D9780_RS03760 mecA 858974..859657 (+) 684 WP_121639335.1 adaptor protein MecA -
  D9780_RS03765 - 860039..861223 (+) 1185 WP_121639336.1 competence protein CoiA -
  D9780_RS03770 pepF 861383..863191 (+) 1809 WP_121639337.1 oligoendopeptidase F Regulator
  D9780_RS03775 ltrA 863874..865136 (+) 1263 WP_121638889.1 group II intron reverse transcriptase/maturase -
  D9780_RS03780 - 865232..865417 (-) 186 WP_077703104.1 hypothetical protein -
  D9780_RS03785 - 866133..867416 (+) 1284 WP_121639338.1 IS110 family transposase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 69493.92 Da        Isoelectric Point: 4.6084

>NTDB_id=320748 D9780_RS03770 WP_121639337.1 861383..863191(+) (pepF) [Virgibacillus sp. Bac330]
MAKANKELPKRTELPVELTWRLEDIFETDEAWEQELADLQKAIPEIENYQGLLGSSAKNLYEVLKLQDQLSERLGKLFTY
AHMRYDQDTTNSFYQRINAQAENVITVASSKMSYIVPEILEINEATLKQFMQEEEGLQGYQKTLDEITRQRPHILNKREE
AILAEASESLGTASQTFGMLNNADLTFPSIKDEDGEEVDVTHGRYIRFMESQDRSVRKAAFQAMYETYGAFKNTFASTLS
GNIKKDNFVAKVRNYESARQAALDNNHIPEKVYDNLVEAVNERLPLLHRYIQLRKKVLELDELHMYDIYTPLVRDVDMEI
TYEKAQQYVLEGLAPLGEGYLNIVKEAYNNRWIDVEENKGKRSGAYSSGAYGTNPYILLNWQDNVNDMFTLAHELGHSVH
SYYTRNNQPYRYGNYSIFVAEVASTCNEALLNDYLLKNLTDEKQKLYVLNHFLEGFRGTVFRQTMFAEFEHMIHVKQQQG
EALTAEKLTELYYDLNKKYYGDDVISDEEIGLEWARIPHFYYNYYVYQYATGYSAATALAQQILTEGDGAVERYTDFLKA
GSSEYPIEVLQKAGVDMNSKQTILDALDVFAEKLEQLEGLLK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=320748 D9780_RS03770 WP_121639337.1 861383..863191(+) (pepF) [Virgibacillus sp. Bac330]
ATGGCAAAAGCTAATAAAGAACTACCTAAAAGAACAGAACTCCCTGTTGAATTAACATGGAGGTTAGAGGATATTTTTGA
AACGGATGAAGCATGGGAACAGGAATTAGCAGATTTGCAGAAAGCTATTCCAGAAATTGAAAATTACCAAGGCTTATTAG
GTTCCTCTGCGAAAAACCTTTATGAAGTGTTAAAGCTTCAGGATCAATTATCGGAACGGTTAGGCAAGCTCTTTACATAT
GCACATATGCGTTATGATCAGGATACGACAAATTCATTTTATCAGCGGATAAATGCACAAGCAGAGAACGTTATTACGGT
TGCATCTAGTAAAATGAGCTATATTGTACCAGAGATTTTAGAAATTAACGAAGCTACTTTAAAGCAGTTTATGCAAGAAG
AAGAAGGTTTGCAAGGTTATCAAAAAACATTGGATGAAATCACTCGTCAGCGACCGCATATTCTAAATAAGCGCGAAGAG
GCGATTTTAGCTGAAGCTTCAGAGTCGTTAGGAACTGCTTCTCAGACATTTGGTATGTTAAACAATGCAGATTTAACGTT
TCCATCAATTAAGGATGAAGACGGAGAAGAAGTAGACGTTACACATGGTAGATATATTCGCTTTATGGAATCACAAGATC
GTTCTGTACGGAAGGCAGCTTTTCAAGCAATGTATGAAACGTACGGTGCGTTTAAAAACACATTTGCGTCGACATTGAGT
GGAAATATTAAAAAAGATAACTTTGTTGCCAAAGTAAGAAATTACGAATCTGCTAGACAAGCCGCGCTTGATAATAATCA
TATTCCGGAGAAAGTGTATGATAATTTAGTTGAAGCAGTTAATGAACGTCTTCCGTTACTGCATCGATATATTCAATTGC
GTAAAAAAGTGTTGGAATTAGATGAATTGCATATGTACGATATTTATACACCGCTTGTTCGTGATGTTGATATGGAAATC
ACCTATGAAAAAGCGCAGCAATATGTGCTTGAAGGCCTTGCTCCATTAGGAGAGGGTTATTTAAATATTGTAAAAGAAGC
GTATAATAATCGATGGATTGATGTGGAAGAAAATAAAGGAAAACGCAGTGGGGCTTATTCTTCAGGTGCTTATGGAACGA
ATCCTTACATTCTGCTGAATTGGCAGGATAATGTAAATGATATGTTTACTTTAGCTCATGAGCTGGGGCATTCTGTTCAT
AGCTACTATACGCGAAATAACCAACCTTATCGCTATGGAAACTACTCTATTTTTGTTGCGGAGGTTGCTTCTACATGCAA
TGAAGCATTGTTAAATGATTACTTATTAAAAAATCTAACAGATGAAAAACAAAAGCTATACGTATTAAATCATTTTCTAG
AAGGATTTAGAGGAACTGTATTTCGTCAAACGATGTTTGCTGAGTTTGAACATATGATCCATGTAAAGCAACAGCAAGGA
GAAGCTCTAACTGCAGAAAAGCTTACTGAATTGTATTATGATTTGAATAAAAAATATTATGGTGATGATGTTATTTCTGA
TGAAGAAATTGGTCTGGAATGGGCGCGAATCCCTCACTTCTATTACAATTATTATGTATATCAGTATGCAACAGGATATT
CAGCAGCAACGGCCTTAGCGCAGCAAATTTTAACAGAAGGCGATGGAGCTGTGGAACGTTATACGGATTTTCTAAAAGCA
GGTAGTAGCGAGTACCCGATTGAAGTATTGCAAAAAGCTGGCGTAGATATGAATAGTAAACAAACGATTTTGGATGCATT
AGATGTGTTTGCTGAAAAACTGGAGCAATTAGAAGGTCTGCTTAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-587)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.986

98.339

0.482

Multiple sequence alignment