Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BCB4264_RS06605 Genome accession   NC_011725
Coordinates   1290810..1291133 (-) Length   107 a.a.
NCBI ID   WP_000578884.1    Uniprot ID   A0A9W5R9C5
Organism   Bacillus cereus B4264     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1285810..1296133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BCB4264_RS06575 (BCB4264_A1327) - 1285818..1286045 (+) 228 WP_000251857.1 hypothetical protein -
  BCB4264_RS06580 (BCB4264_A1328) - 1286199..1287485 (+) 1287 WP_000247021.1 D-alanyl-D-alanine carboxypeptidase family protein -
  BCB4264_RS06585 (BCB4264_A1329) - 1287676..1288245 (+) 570 WP_000767796.1 signal peptidase I -
  BCB4264_RS06590 (BCB4264_A1330) - 1288306..1288893 (+) 588 WP_000172852.1 CalY family protein -
  BCB4264_RS06595 (BCB4264_A1331) - 1289013..1289771 (+) 759 WP_079994170.1 DUF4047 domain-containing protein -
  BCB4264_RS06600 (BCB4264_A1332) calY 1290149..1290742 (+) 594 WP_000053714.1 biofilm matrix protein CalY -
  BCB4264_RS06605 (BCB4264_A1333) sinR 1290810..1291133 (-) 324 WP_000578884.1 helix-turn-helix domain-containing protein Regulator
  BCB4264_RS06610 (BCB4264_A1334) - 1291213..1291347 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  BCB4264_RS06615 (BCB4264_A1335) inhA1 1291690..1294080 (+) 2391 WP_001035932.1 M6 family metalloprotease immune inhibitor InhA1 -
  BCB4264_RS06620 (BCB4264_A1336) - 1294252..1295619 (+) 1368 WP_000028378.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12335.17 Da        Isoelectric Point: 9.6244

>NTDB_id=32073 BCB4264_RS06605 WP_000578884.1 1290810..1291133(-) (sinR) [Bacillus cereus B4264]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNNK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=32073 BCB4264_RS06605 WP_000578884.1 1290810..1291133(-) (sinR) [Bacillus cereus B4264]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATAATAA
ATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

66.972

100

0.682

Multiple sequence alignment