Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   FED54_RS01980 Genome accession   NZ_CP040259
Coordinates   430047..430562 (+) Length   171 a.a.
NCBI ID   WP_000477149.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain P7774     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 425047..435562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS01965 (FED54_01965) - 425379..426839 (+) 1461 WP_000004971.1 amino acid permease -
  FED54_RS01970 (FED54_01970) - 427116..428321 (+) 1206 WP_000512708.1 RtcB family protein -
  FED54_RS21380 - 428340..428483 (+) 144 WP_162138624.1 hypothetical protein -
  FED54_RS01975 (FED54_01975) omp38 428606..429667 (-) 1062 WP_000777885.1 outer membrane protein Omp38 -
  FED54_RS01980 (FED54_01980) fimT 430047..430562 (+) 516 WP_000477149.1 GspH/FimT family pseudopilin Machinery gene
  FED54_RS01985 (FED54_01985) - 430671..431846 (+) 1176 WP_000129968.1 thiolase family protein -
  FED54_RS01990 (FED54_01990) - 431973..432416 (+) 444 WP_001176585.1 VOC family protein -
  FED54_RS01995 (FED54_01995) - 432459..432812 (-) 354 WP_000457785.1 DMT family transporter -
  FED54_RS02000 (FED54_02000) - 432894..433379 (-) 486 WP_000935247.1 DUF934 domain-containing protein -
  FED54_RS02005 (FED54_02005) - 433372..435015 (-) 1644 WP_000281763.1 nitrite/sulfite reductase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19633.88 Da        Isoelectric Point: 8.8196

>NTDB_id=320729 FED54_RS01980 WP_000477149.1 430047..430562(+) (fimT) [Acinetobacter baumannii strain P7774]
MFKSPGFTIVELTITLVILVIMSVIAIPLYHQFMASVELKNTPRILTIHIQKAKYDAIIRHKNVVLCPSSDQLVCNTNWD
NRVISFVDNNRNLQHDLNEELLTSIDLNHHYGSMKLQRFGKKQNSIIFQGNSGLPIESNGSFIYCSYDQLKNFKLILSKM
GHVRLEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=320729 FED54_RS01980 WP_000477149.1 430047..430562(+) (fimT) [Acinetobacter baumannii strain P7774]
ATGTTTAAATCTCCTGGTTTTACTATAGTTGAGCTCACTATAACACTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAACTAAAAAATACGCCGCGCATACTCACAATTCATATACAAAAAGCCA
AATATGACGCAATTATTAGGCATAAGAATGTTGTTCTTTGTCCAAGTTCTGATCAATTGGTCTGCAATACGAATTGGGAT
AACCGCGTAATCAGCTTTGTAGATAATAACCGTAATCTACAACATGATTTAAATGAAGAATTATTGACCTCTATAGATCT
TAACCATCACTACGGTTCTATGAAATTACAACGTTTTGGAAAAAAACAAAATAGTATTATTTTTCAAGGTAATTCTGGAC
TACCCATCGAGTCGAATGGCAGTTTTATCTATTGTTCTTATGACCAGCTTAAAAACTTTAAATTAATTCTTAGCAAAATG
GGCCATGTGCGCTTAGAAGAGCTTAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(50-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427