Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9782_RS14405 Genome accession   NZ_CP033046
Coordinates   3025884..3027641 (+) Length   585 a.a.
NCBI ID   WP_121605067.1    Uniprot ID   -
Organism   Virgibacillus sp. Bac332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3020884..3032641
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9782_RS14380 - 3022139..3022369 (+) 231 WP_026681110.1 exodeoxyribonuclease VII small subunit -
  D9782_RS14385 - 3022372..3023256 (+) 885 WP_121605889.1 polyprenyl synthetase family protein -
  D9782_RS14390 - 3023954..3024529 (+) 576 WP_121605065.1 hypothetical protein -
  D9782_RS14395 - 3024548..3025378 (+) 831 WP_121605066.1 TlyA family RNA methyltransferase -
  D9782_RS14400 ahrC 3025410..3025859 (+) 450 WP_026681106.1 transcriptional regulator AhrC/ArgR -
  D9782_RS14405 recN 3025884..3027641 (+) 1758 WP_121605067.1 DNA repair protein RecN Machinery gene
  D9782_RS14410 spoIVB 3027881..3029176 (+) 1296 WP_051388309.1 SpoIVB peptidase -
  D9782_RS14415 spo0A 3029485..3030261 (+) 777 WP_026681103.1 sporulation transcription factor Spo0A -
  D9782_RS14420 - 3030581..3031927 (-) 1347 WP_026681102.1 aspartate kinase -
  D9782_RS14425 - 3032066..3032314 (-) 249 WP_026681101.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 585 a.a.        Molecular weight: 66563.29 Da        Isoelectric Point: 5.1637

>NTDB_id=320727 D9782_RS14405 WP_121605067.1 3025884..3027641(+) (recN) [Virgibacillus sp. Bac332]
MLTELSIQDFAIINKISITFHDGLTVLTGETGAGKSIIIDAVQLLAGGRGSVEFVRYGTKKADIEGLFTIDDKSHAIYEI
GRQYGIEIQDEQIVLRRTITANGKSICRVNSKLVTLAILREFGKALIDIHSQHETQSLMDPDNHIDLLDQYNAAQIGRAK
EEYIRLYEELSNLKTRYRKLSENEQETAQRLDLLEFQMTELASADLEPNEDQRLEEERSSLANYERIYAALQIAYNALYG
DQKGLEWVTTAQTALQDNGRYDTFIAGKAEEIGNYFFGLEELTHDLGNYLESMQYDPERLNEIEARLSEINRLKKKYGSS
VDEILEYMAKIEEEMEEIKNKDSHLSKLEKQINEKAKDAYLEAEELHALRLKAANALTKEIHDELKGLYLDKAAFSVSFE
HENMDQYIRSDEYHAINLHQKGYDQVKFMISTNPGEPLKELSKVASGGELSRIMLALKKIFARNQGVTSVIFDEVDTGVS
GRVAQAIAEKIHHISKESQVLCITHLPQVAAMADTHKLIEKQTQNDRTHTMVSELSIDYQINELARMITGTKLTDTAVEH
AREMLEMAVNYKSKKKHNMKDKARK

Nucleotide


Download         Length: 1758 bp        

>NTDB_id=320727 D9782_RS14405 WP_121605067.1 3025884..3027641(+) (recN) [Virgibacillus sp. Bac332]
GTGCTAACAGAGTTATCTATACAGGATTTTGCTATAATTAATAAAATTTCAATTACCTTCCATGATGGTCTCACTGTATT
AACCGGAGAGACAGGTGCTGGGAAATCCATTATTATAGATGCAGTGCAATTACTTGCGGGTGGAAGAGGTTCCGTTGAGT
TTGTCAGGTATGGAACGAAAAAAGCTGATATTGAAGGTTTGTTTACAATAGATGATAAGTCGCATGCTATTTATGAAATC
GGAAGACAGTATGGTATTGAAATTCAAGATGAGCAAATTGTTCTTCGGCGTACGATAACTGCGAATGGGAAGAGTATTTG
TCGCGTAAATAGCAAGCTAGTTACATTGGCAATACTACGTGAATTTGGAAAAGCGCTAATTGATATTCATAGCCAGCATG
AAACACAATCACTAATGGACCCAGATAATCATATTGATTTATTGGATCAGTATAATGCTGCACAAATAGGACGAGCTAAA
GAAGAGTATATTCGCTTATATGAGGAATTAAGTAATTTAAAAACTCGTTATCGCAAACTAAGCGAAAACGAGCAAGAAAC
AGCACAGCGGCTTGACTTGCTTGAATTTCAAATGACGGAACTGGCATCTGCGGATTTGGAGCCTAACGAGGATCAAAGGT
TAGAAGAGGAAAGAAGCTCTTTAGCCAATTATGAACGCATTTACGCTGCGTTACAAATAGCCTATAACGCTCTATATGGT
GATCAAAAAGGGCTTGAATGGGTTACAACTGCACAAACAGCTTTACAGGATAATGGTAGGTACGACACATTTATTGCTGG
AAAAGCAGAGGAAATTGGGAATTATTTCTTTGGCTTAGAAGAGCTAACCCATGATTTAGGGAATTATCTAGAGTCTATGC
AGTATGATCCAGAGCGGTTAAATGAAATAGAAGCTCGACTTAGCGAAATTAACCGCTTAAAGAAAAAGTATGGCTCAAGC
GTTGATGAAATATTAGAGTACATGGCTAAAATTGAAGAGGAAATGGAAGAAATAAAAAATAAGGATTCCCATTTATCAAA
ATTAGAAAAACAAATAAATGAAAAAGCAAAGGATGCTTATTTAGAAGCGGAAGAATTACACGCGCTTCGTTTAAAGGCAG
CGAATGCTTTAACGAAAGAAATTCATGATGAATTAAAAGGACTATATTTAGATAAAGCTGCATTTTCTGTATCATTCGAA
CATGAAAACATGGATCAATATATCCGTAGTGATGAATATCATGCAATAAATCTCCATCAAAAAGGATATGATCAGGTTAA
ATTCATGATTTCTACGAATCCGGGCGAGCCATTAAAAGAACTAAGTAAAGTTGCTTCTGGTGGCGAACTGTCACGAATTA
TGTTAGCACTTAAAAAGATATTCGCTAGAAATCAAGGTGTTACGAGTGTTATATTTGATGAGGTAGATACAGGTGTGAGT
GGCAGAGTAGCACAAGCTATAGCAGAGAAAATTCATCATATTTCTAAGGAATCACAGGTGCTTTGTATCACACATCTCCC
ACAAGTAGCTGCAATGGCTGATACGCATAAATTAATTGAAAAGCAGACACAGAACGATCGAACGCATACGATGGTTAGTG
AATTATCAATCGATTATCAAATAAATGAATTAGCAAGAATGATTACGGGAACCAAACTTACAGATACAGCCGTAGAGCAT
GCACGTGAAATGTTGGAAATGGCTGTGAATTATAAATCAAAAAAGAAGCATAATATGAAGGATAAAGCCAGAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.076

98.803

0.515

Multiple sequence alignment