Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   FED54_RS01845 Genome accession   NZ_CP040259
Coordinates   400912..401274 (-) Length   120 a.a.
NCBI ID   WP_000101096.1    Uniprot ID   A0ABN3ANQ3
Organism   Acinetobacter baumannii strain P7774     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 395912..406274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FED54_RS01835 (FED54_01835) - 398190..400269 (-) 2080 Protein_352 methyl-accepting chemotaxis protein -
  FED54_RS01840 (FED54_01840) - 400316..400851 (-) 536 Protein_353 chemotaxis protein CheW -
  FED54_RS01845 (FED54_01845) pilH 400912..401274 (-) 363 WP_000101096.1 PleD family two-component system response regulator Machinery gene
  FED54_RS01850 (FED54_01850) pilG 401298..401681 (-) 384 WP_000389061.1 twitching motility response regulator PilG Regulator
  FED54_RS01855 (FED54_01855) - 401964..402602 (+) 639 WP_002027721.1 hypothetical protein -
  FED54_RS01860 (FED54_01860) - 402662..403780 (+) 1119 WP_001260821.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13479.47 Da        Isoelectric Point: 4.9102

>NTDB_id=320727 FED54_RS01845 WP_000101096.1 400912..401274(-) (pilH) [Acinetobacter baumannii strain P7774]
MARILIVDDSPTETFRFKEILTKHGYDVLEASNGADGVTLAKAEQPDLVLMDVVMPGVNGFQATRQITRDEDTKHIPVVI
VSTKDQATDRVWGKRQGAIDYLIKPIEEKQLIDVIKQFLN

Nucleotide


Download         Length: 363 bp        

>NTDB_id=320727 FED54_RS01845 WP_000101096.1 400912..401274(-) (pilH) [Acinetobacter baumannii strain P7774]
ATGGCACGTATTCTCATTGTTGATGACTCACCAACAGAAACTTTTCGTTTTAAAGAAATCCTAACTAAGCATGGCTATGA
CGTACTTGAAGCATCTAACGGTGCAGATGGTGTGACTTTGGCAAAAGCTGAGCAGCCTGACTTGGTATTAATGGATGTGG
TCATGCCAGGTGTAAATGGTTTTCAGGCAACGCGCCAGATTACCCGTGATGAAGACACGAAGCATATTCCAGTGGTGATT
GTGAGTACTAAAGATCAGGCAACTGACCGAGTATGGGGTAAACGTCAAGGCGCAATCGATTACTTAATCAAGCCAATCGA
AGAAAAGCAATTAATTGATGTAATTAAACAATTTCTAAATTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

39.496

99.167

0.392

Multiple sequence alignment