Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   D9782_RS08170 Genome accession   NZ_CP033046
Coordinates   1712586..1713539 (+) Length   317 a.a.
NCBI ID   WP_026683096.1    Uniprot ID   A0AAJ4JRS9
Organism   Virgibacillus sp. Bac332     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1707586..1718539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9782_RS08150 - 1708436..1709737 (+) 1302 WP_121604459.1 transposase -
  D9782_RS23325 - 1709727..1709903 (+) 177 WP_205388397.1 hypothetical protein -
  D9782_RS08155 - 1710239..1710436 (+) 198 WP_121604487.1 hypothetical protein -
  D9782_RS08160 - 1710613..1711482 (+) 870 WP_026683094.1 MBL fold metallo-hydrolase -
  D9782_RS08165 - 1711566..1712282 (+) 717 WP_026683095.1 DsbA family oxidoreductase -
  D9782_RS08170 ceuB 1712586..1713539 (+) 954 WP_026683096.1 ABC transporter permease Machinery gene
  D9782_RS08175 - 1713529..1714479 (+) 951 WP_121604488.1 iron chelate uptake ABC transporter family permease subunit -
  D9782_RS08180 - 1714473..1715228 (+) 756 WP_026683098.1 ABC transporter ATP-binding protein -
  D9782_RS08185 - 1715520..1716488 (+) 969 WP_121604489.1 siderophore ABC transporter substrate-binding protein -
  D9782_RS08190 - 1716595..1717467 (-) 873 Protein_1644 IS3 family transposase -
  D9782_RS08195 - 1717425..1718087 (-) 663 WP_121604491.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34918.27 Da        Isoelectric Point: 9.8741

>NTDB_id=320719 D9782_RS08170 WP_026683096.1 1712586..1713539(+) (ceuB) [Virgibacillus sp. Bac332]
MKIRYLVLALILLSFVSLFIGVSDISPLDIFGLSEDQAKVLMVSRVPRLISILIAGMSMSICGLIMQQLSRNKFVSPTTA
GTLDAARLGILVSMVVFTAANPFQKMLVSFAFALLGTFAFMKILEKIKFKDAIFIPLIGLMFGNIISSMSTFIAYKYDLI
QNISSWMQGDFSMIMSGNYELMYVSIPILLLAFFYANKFTIAGMGEDFSKNLGLNYRQVVNLGLIIVALVTASVVLAVGV
IPFLGLIIPNIVTIYQGDHLKKSLVHTALLGALFVLICDIIGRVIIYPYEIPISLTVGVIGSGLFIYLLFRRKKYGI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=320719 D9782_RS08170 WP_026683096.1 1712586..1713539(+) (ceuB) [Virgibacillus sp. Bac332]
ATGAAAATACGTTACTTAGTACTAGCACTTATACTACTTTCCTTTGTATCTTTATTTATTGGTGTTTCTGATATATCTCC
ATTAGATATATTTGGATTATCAGAGGATCAGGCAAAAGTATTAATGGTATCAAGAGTTCCAAGACTTATTAGTATATTAA
TAGCTGGAATGAGCATGAGCATATGTGGACTAATTATGCAACAGTTAAGTAGAAACAAATTTGTTTCACCTACAACTGCT
GGTACATTAGATGCAGCAAGGCTTGGTATCCTCGTTTCCATGGTTGTATTTACAGCTGCCAATCCATTTCAAAAAATGCT
TGTATCATTCGCATTTGCGCTTTTAGGTACATTTGCATTTATGAAGATACTGGAAAAGATAAAATTTAAAGATGCCATAT
TCATTCCGCTTATTGGACTGATGTTTGGAAATATCATTAGCTCCATGTCCACTTTCATCGCATACAAGTATGATTTAATT
CAAAATATATCGTCATGGATGCAGGGCGATTTTTCTATGATTATGAGTGGAAACTACGAGTTAATGTATGTTAGCATTCC
GATCCTGCTATTGGCTTTTTTTTATGCCAATAAATTTACCATTGCTGGAATGGGTGAGGACTTCTCCAAAAACTTGGGTT
TAAATTATCGACAAGTAGTTAATTTAGGTCTAATTATAGTAGCATTAGTTACTGCATCCGTAGTCTTGGCGGTAGGTGTG
ATTCCATTCCTTGGTTTGATTATTCCGAATATCGTAACCATCTATCAAGGTGATCATTTAAAGAAGAGCTTGGTACATAC
AGCATTATTAGGGGCTTTATTCGTTCTTATATGTGATATTATTGGCAGAGTAATTATATATCCATATGAAATACCAATTA
GCTTAACCGTTGGCGTGATAGGTAGTGGGTTATTTATCTATCTGCTGTTTAGGAGAAAAAAATATGGGATATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.114

99.685

0.539

Multiple sequence alignment