Detailed information NTG0320717

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: D9782_RS05510
• Genome accession: NZ_CP033046
• Coordinates: 1164747..1166123 (+)
• Length: 458 a.a.
• NCBI ID: WP_026680210.1
• Uniprot ID: -
• Organism: Virgibacillus sp. Bac332
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1159747..1171123

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D9782_RS05495	-	1160224..1160772 (+)	549	WP_026680207.1	UvrB/UvrC motif-containing protein	-
D9782_RS05500	-	1160769..1161833 (+)	1065	WP_121604285.1	protein arginine kinase	-
D9782_RS05505	clpC	1161852..1164278 (+)	2427	WP_026680209.1	ATP-dependent protease ATP-binding subunit ClpC	-
D9782_RS05510	radA	1164747..1166123 (+)	1377	WP_026680210.1	DNA repair protein RadA	Machinery gene
D9782_RS05515	-	1166510..1167607 (+)	1098	WP_026680211.1	PIN/TRAM domain-containing protein	-
D9782_RS05520	gltX	1167752..1169221 (+)	1470	WP_121604286.1	glutamate--tRNA ligase	-
D9782_RS05525	cysE	1169784..1170425 (+)	642	WP_034678611.1	serine O-acetyltransferase	-

Sequence

Protein

• Length: 458 a.a.
• Molecular weight: 50123.66 Da
• Isoelectric Point: 6.8341

>NTDB_id=320717 D9782_RS05510 WP_026680210.1 1164747..1166123(+) (radA) [Virgibacillus sp. Bac332]
MAKRKTKYVCQECGYESPKWMGKCPGCHNWNTFVEEVEITGGRHKQAFQTGARSTVGKPEKITSIESEEEPRVTTSMKEF
NRVLGGGIVPGSLVLIGGDPGIGKSTLLLQISAQLADKQLPVLYISGEESTRQTKLRADRLGVKADLLYVLAETNLLDIS
NQVEAIKPSFVVIDSIQTIFREEVSSAPGSVSQVRECTAELMKLAKSNGIPIFIVGHVTKEGAIAGPRLLEHMVDAVLYF
EGERHHTYRILRGVKNRFGSTNEMGIFEMKEEGLREVMNPSEIFLEERSQGAAGSTVVASMEGTRPVLVEIQALISPSAF
GNPRRMATGIDHNRVPLLMAVLEKRVGLMLQNQDAYIKVAGGVKLDEPAIDLAIAVSIASSFRDQPTKPDDIFVGEVGLT
GEIRRVSRIEQRVQEAAKLGFKRVICPKNNLDGWTVPDSIEVIGVESVQQALNIGVSR

Nucleotide

• Length: 1377 bp

>NTDB_id=320717 D9782_RS05510 WP_026680210.1 1164747..1166123(+) (radA) [Virgibacillus sp. Bac332]
TTGGCAAAGCGAAAAACGAAATATGTTTGTCAGGAATGTGGCTATGAATCCCCTAAATGGATGGGAAAATGTCCTGGATG
TCACAATTGGAATACCTTTGTAGAGGAAGTAGAGATAACTGGAGGTCGACATAAGCAGGCTTTTCAAACAGGTGCTAGAT
CTACCGTCGGCAAGCCAGAGAAAATCACTTCTATCGAATCAGAAGAGGAACCACGTGTAACAACCTCTATGAAGGAATTT
AACCGCGTATTAGGAGGCGGAATCGTACCAGGGTCATTGGTGTTGATTGGTGGCGATCCGGGTATTGGAAAGTCTACATT
ACTTTTACAGATCTCAGCGCAATTAGCGGATAAGCAATTACCTGTCCTTTATATATCTGGAGAGGAATCTACAAGACAAA
CGAAGCTACGAGCAGACCGTTTAGGTGTTAAAGCGGATTTACTTTATGTATTAGCGGAAACAAATTTATTAGATATATCC
AATCAAGTAGAAGCCATTAAGCCTTCTTTTGTTGTTATTGATTCTATCCAGACGATTTTTCGGGAAGAGGTTTCAAGTGC
ACCGGGAAGTGTTTCACAGGTTCGCGAATGCACGGCAGAGCTGATGAAGCTGGCAAAATCAAATGGCATTCCTATTTTTA
TTGTGGGACATGTAACAAAGGAAGGGGCTATAGCTGGTCCCAGGCTGTTAGAGCACATGGTTGATGCGGTTCTTTATTTT
GAAGGAGAGCGGCATCATACGTATCGTATTTTACGTGGGGTGAAAAATCGTTTCGGTAGTACGAATGAGATGGGGATATT
TGAAATGAAAGAAGAAGGACTAAGGGAAGTAATGAATCCTTCTGAAATCTTCCTAGAAGAGCGCTCACAAGGAGCTGCTG
GGTCAACTGTTGTTGCTTCTATGGAAGGAACAAGGCCTGTGCTTGTTGAAATTCAAGCGTTGATTTCACCTTCAGCCTTT
GGGAACCCACGGAGGATGGCAACAGGGATTGATCATAATCGTGTTCCGCTGCTTATGGCAGTGCTGGAGAAGCGTGTTGG
ACTTATGTTACAGAATCAGGACGCCTATATAAAAGTAGCAGGTGGCGTAAAATTGGATGAACCCGCGATTGATTTAGCAA
TAGCAGTAAGTATTGCATCGAGTTTTCGTGATCAACCAACAAAGCCTGATGATATTTTTGTTGGAGAAGTTGGATTAACG
GGAGAGATTAGACGTGTATCTCGTATCGAACAACGAGTTCAAGAAGCGGCAAAGCTAGGTTTTAAGCGCGTTATTTGTCC
AAAAAATAATTTGGACGGTTGGACAGTTCCAGATAGTATTGAGGTTATCGGTGTAGAATCCGTTCAACAAGCATTAAATA
TTGGAGTCAGCAGGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (358-430)

• AAA domain (AAA_25) (75-222)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	75	98.69	0.74
radA	Streptococcus pneumoniae Rx1	64.159	98.69	0.633
radA	Streptococcus pneumoniae D39	64.159	98.69	0.633
radA	Streptococcus pneumoniae R6	64.159	98.69	0.633
radA	Streptococcus pneumoniae TIGR4	64.159	98.69	0.633
radA	Streptococcus mitis NCTC 12261	64.159	98.69	0.633
radA	Streptococcus mitis SK321	64.159	98.69	0.633