Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   FEF05_RS09080 Genome accession   NZ_CP040243
Coordinates   1811687..1812292 (-) Length   201 a.a.
NCBI ID   WP_015939588.1    Uniprot ID   B8F5Q8
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1806687..1817292
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS09065 (FEF05_09070) rpiA 1807877..1808536 (+) 660 WP_021113784.1 ribose-5-phosphate isomerase RpiA -
  FEF05_RS09070 (FEF05_09075) serA 1808598..1809830 (+) 1233 WP_149351100.1 phosphoglycerate dehydrogenase -
  FEF05_RS09075 (FEF05_09080) pyrG 1809942..1811576 (-) 1635 WP_149351101.1 glutamine hydrolyzing CTP synthase -
  FEF05_RS09080 (FEF05_09085) recR 1811687..1812292 (-) 606 WP_015939588.1 recombination mediator RecR Machinery gene
  FEF05_RS09085 (FEF05_09090) - 1812359..1812688 (-) 330 WP_005712069.1 YbaB/EbfC family nucleoid-associated protein -
  FEF05_RS09090 (FEF05_09095) - 1812851..1813513 (+) 663 WP_149351102.1 pseudouridine synthase -
  FEF05_RS09095 (FEF05_09100) galE 1813578..1814594 (+) 1017 WP_021109812.1 UDP-glucose 4-epimerase GalE -
  FEF05_RS09100 (FEF05_09105) - 1814597..1815868 (+) 1272 WP_015939585.1 AmpG family muropeptide MFS transporter -
  FEF05_RS09105 (FEF05_09110) tal 1815983..1816933 (+) 951 WP_010786288.1 transaldolase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22124.33 Da        Isoelectric Point: 5.8690

>NTDB_id=320708 FEF05_RS09080 WP_015939588.1 1811687..1812292(-) (recR) [Glaesserella parasuis strain HPS-1]
MQSSPLLENLMEALRVLPGVGPKSAQRMAYHLLQRNRSGGVNLAKALSEAMTHIGHCKSCRTFTEEDECAICQNYRRQIS
GQLCVVEMPADIQAIEQTGQFSGRYFVLMGHLSPLDGIGPREIGLDLLQKRLEEESFQEVILATNPTIEGDATANYIAEM
CSIHNIKVTRIAHGIPVGSELEMVDGTSLSHSFVGRRDISL

Nucleotide


Download         Length: 606 bp        

>NTDB_id=320708 FEF05_RS09080 WP_015939588.1 1811687..1812292(-) (recR) [Glaesserella parasuis strain HPS-1]
ATGCAAAGTAGCCCTTTACTTGAAAATCTTATGGAAGCCCTGCGTGTATTGCCAGGGGTCGGTCCAAAATCTGCACAACG
TATGGCGTATCATCTTTTACAGCGTAACCGCTCAGGCGGTGTGAATTTAGCTAAAGCATTGAGCGAAGCAATGACTCACA
TTGGACATTGCAAATCTTGCCGAACTTTTACTGAAGAAGATGAGTGTGCTATCTGCCAAAACTACCGCCGCCAAATCAGC
GGACAACTTTGTGTGGTTGAAATGCCTGCAGATATTCAAGCGATTGAACAAACTGGGCAATTTTCAGGGCGTTATTTTGT
ATTAATGGGACATCTATCTCCTTTAGATGGAATAGGACCTCGCGAAATTGGTTTAGATTTATTACAAAAACGCTTAGAAG
AAGAATCTTTTCAAGAAGTGATTCTGGCAACCAATCCAACGATTGAGGGGGATGCGACCGCAAATTATATCGCTGAGATG
TGTTCTATTCACAATATTAAAGTTACTCGTATTGCGCACGGTATTCCTGTCGGAAGTGAATTAGAAATGGTTGACGGAAC
AAGCCTTTCTCATTCATTTGTCGGAAGACGGGATATTTCTTTATAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(42-77)

Toprim domain (Toprim_4)

(82-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F5Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

99.005

0.428
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.5

99.502

0.403