Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D9829_RS20515 Genome accession   NZ_CP033044
Coordinates   4173991..4175760 (+) Length   589 a.a.
NCBI ID   WP_121614020.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 4168991..4180760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS20490 - 4169062..4169838 (+) 777 WP_121612756.1 TerC family protein -
  D9829_RS20495 - 4170300..4170572 (+) 273 WP_121612757.1 CPCC family cysteine-rich protein -
  D9829_RS20500 - 4170799..4171161 (+) 363 WP_121612758.1 hypothetical protein -
  D9829_RS20505 - 4171640..4172065 (+) 426 WP_121612759.1 MarR family winged helix-turn-helix transcriptional regulator -
  D9829_RS20510 rcrP 4172163..4173929 (+) 1767 WP_121612760.1 ABC transporter ATP-binding protein Regulator
  D9829_RS20515 rcrQ 4173991..4175760 (+) 1770 WP_121614020.1 ABC transporter ATP-binding protein Regulator
  D9829_RS20520 - 4175871..4176470 (+) 600 WP_306822071.1 dienelactone hydrolase family protein -
  D9829_RS20525 - 4176503..4177021 (+) 519 WP_121612761.1 GNAT family N-acetyltransferase -
  D9829_RS20530 - 4177471..4178217 (+) 747 WP_121612762.1 MurR/RpiR family transcriptional regulator -
  D9829_RS20535 mngA 4178331..4180256 (+) 1926 WP_121612763.1 PTS 2-O-a-mannosyl-D-glycerate transporter subunit IIABC -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65191.65 Da        Isoelectric Point: 5.8887

>NTDB_id=320699 D9829_RS20515 WP_121614020.1 4173991..4175760(+) (rcrQ) [Mesobacillus foraminis strain Bac44]
MGVPGAKAKDFKKTAKQLISYCKTYLPLIVIALILAMAGSVFNIAGPELLSQITDLITEGLMTTIDLDAVVNVAGFLAFL
YGLGFFFNYIQGFIMATVTQRVSKNLRSDISTKINRLPLKYFDSNSTGDVLSRVTNDVDMIGQTMNQSLSTLVSAITMFV
GTLIMMFYTNWIMAISAILSTIVGFALMTFIISKSQKYFAQQQTELGKLNGHIEEIYSGHNVVKVYNGEKKAKETFHEIN
TRLYNSAWKSQFLSGLMMPLMMFVGNFGYVVVCIVGALLAVNDAISFGVIVAFMIYIRLFTQPLTQLAQAATNLQSTAAA
SERVFEFLAEEELADEQEKTMRLKDAKGHVEFKNVRFGYSEDKIIINNFSACAKAGQKVAIVGPTGAGKTTLINLLMRFY
EVSGGEILIDGVPTRQLTRENIHELFCMVLQDTWLFEGTIRENIVYSRKGVTHEEVEAACKAVGLYHFIQTLPMGYDTVL
DDKANLSAGQKQLITIARAMVEDAPLLILDEATSSVDTRTEVLIQEAMDKLTVGKTSFVIAHRLSTIKNADLILVMKDGD
IIESGNHRELLAKNGFYADLYNSQFEDAS

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=320699 D9829_RS20515 WP_121614020.1 4173991..4175760(+) (rcrQ) [Mesobacillus foraminis strain Bac44]
ATGGGTGTTCCTGGCGCAAAAGCTAAAGACTTCAAGAAAACCGCAAAGCAGCTGATCTCCTATTGTAAAACCTATTTGCC
ACTAATTGTGATCGCTTTGATTCTTGCAATGGCTGGGTCTGTCTTCAATATCGCTGGTCCAGAACTGCTCAGCCAGATTA
CAGATTTAATTACAGAAGGATTGATGACGACCATTGATCTTGACGCTGTTGTCAATGTCGCAGGCTTTTTGGCATTCCTT
TACGGGCTGGGTTTCTTTTTTAACTATATACAAGGGTTCATTATGGCGACAGTCACCCAGCGGGTCTCCAAGAATTTACG
CAGCGACATTTCAACGAAAATTAATCGTCTGCCGCTAAAATATTTTGACTCAAACAGCACCGGGGATGTTCTTAGCCGTG
TGACCAATGATGTGGATATGATTGGACAGACGATGAACCAGAGTTTAAGTACCCTGGTATCAGCAATTACCATGTTTGTG
GGCACACTCATCATGATGTTTTATACCAACTGGATCATGGCCATCTCGGCAATTCTATCGACCATTGTCGGTTTTGCCTT
AATGACGTTCATTATCTCCAAGTCACAGAAATATTTTGCCCAGCAGCAAACAGAGCTAGGAAAGCTTAATGGGCATATTG
AAGAGATCTATTCAGGCCATAATGTGGTGAAGGTATATAATGGAGAGAAGAAAGCGAAGGAAACGTTTCATGAGATCAAT
ACGAGACTTTATAACAGCGCCTGGAAGTCCCAGTTCTTGTCCGGACTTATGATGCCGTTGATGATGTTCGTTGGAAACTT
TGGCTATGTAGTGGTCTGTATCGTGGGTGCCTTGCTTGCTGTTAATGATGCCATTTCATTTGGCGTGATTGTTGCCTTTA
TGATTTATATCCGACTGTTCACTCAGCCGCTTACCCAGCTTGCACAGGCAGCAACGAACCTGCAGTCAACGGCTGCTGCA
AGTGAACGTGTATTTGAGTTTCTTGCCGAGGAAGAACTTGCAGACGAACAAGAAAAGACCATGAGACTGAAGGATGCAAA
GGGGCATGTTGAATTTAAGAATGTCCGTTTTGGATACAGTGAAGATAAAATCATTATCAACAACTTTTCGGCTTGTGCAA
AAGCTGGACAAAAAGTGGCCATTGTCGGTCCTACCGGGGCAGGCAAGACTACTTTGATCAACCTTCTTATGCGCTTTTAT
GAAGTCAGCGGCGGAGAGATTTTGATTGATGGCGTGCCAACCAGGCAGCTTACAAGGGAAAACATCCATGAGCTGTTCTG
CATGGTTCTTCAGGACACCTGGCTGTTTGAAGGTACCATTCGTGAAAATATCGTCTATTCCAGGAAAGGGGTCACTCATG
AGGAGGTCGAAGCAGCCTGTAAAGCAGTCGGACTGTATCATTTTATCCAGACTCTCCCTATGGGTTATGACACCGTACTG
GATGATAAAGCCAATCTGTCCGCTGGCCAGAAACAGCTGATTACCATTGCTCGTGCCATGGTAGAGGACGCGCCATTGCT
CATTTTGGATGAAGCAACAAGCTCCGTTGATACCCGCACCGAAGTCCTGATTCAGGAGGCGATGGATAAGCTGACGGTCG
GCAAAACGTCCTTCGTTATTGCCCACAGGCTTTCAACAATCAAAAATGCAGACCTAATCCTCGTCATGAAGGATGGAGAC
ATTATCGAAAGCGGCAATCACCGGGAATTGCTTGCCAAAAACGGTTTCTATGCCGATCTGTATAATAGCCAGTTTGAGGA
TGCATCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-304)

ABC transporter (ABC_tran)

(367-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

58.854

97.793

0.576

Multiple sequence alignment