Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   FEF05_RS06535 Genome accession   NZ_CP040243
Coordinates   1311613..1314441 (+) Length   942 a.a.
NCBI ID   WP_149350936.1    Uniprot ID   -
Organism   Glaesserella parasuis strain HPS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1306613..1319441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FEF05_RS12155 (FEF05_06525) - 1306626..1309334 (-) 2709 WP_043896222.1 ATP-dependent DNA helicase -
  FEF05_RS06525 (FEF05_06530) - 1309396..1310607 (-) 1212 WP_149350934.1 ATP-binding protein -
  FEF05_RS06530 (FEF05_06535) ssb 1310813..1311310 (-) 498 WP_149350935.1 single-stranded DNA-binding protein Machinery gene
  FEF05_RS06535 (FEF05_06540) uvrA 1311613..1314441 (+) 2829 WP_149350936.1 excinuclease ABC subunit UvrA Machinery gene
  FEF05_RS06540 (FEF05_06545) - 1314526..1314909 (+) 384 WP_026916461.1 YacL family protein -
  FEF05_RS06545 (FEF05_06550) - 1314875..1315126 (+) 252 WP_010786783.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 942 a.a.        Molecular weight: 104541.10 Da        Isoelectric Point: 6.7392

>NTDB_id=320697 FEF05_RS06535 WP_149350936.1 1311613..1314441(+) (uvrA) [Glaesserella parasuis strain HPS-1]
MQHIDIRGARTHNLKNVNLVLPRDKFIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLS
PAISIEQKSTSHNPRSTVGTVTEIHDYLRLLFARVGEPRCPDHDVPLAAQTISQMVDRVLEEPEGKRLMLLSPVVKDRKG
EHAKLLENLTANGYIRARIDGEICDLSDPPKLELQKKHTIEVVIDRFKVRSDIATRLAQSFETALELSGSTAIIADMDDP
NAEELVFSSSFACSHCGYSLTELEPRLFSFNNPAGACPTCDGLGVQQYFDERKVVQNPDVSLASGAIKGWDRRSFYYFGL
LKSVAKHYDFDIEMPFNQLPKKIQNIILNGSKDEIEFVYVNDRGDSVKRVHTFEGVLNNMARRYKETESNAVREELAKYI
NNRVCTDCEGSRLRREARYVFLEKTNLPMVSEKSIGEALEFFEGLHLSGQKAQIAEKILKEIRERLSFLVNVGLNYLSLS
RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLNTLIHLRNLGNTVIVVEHDEDAIMVADHIVDIG
PGAGVHGGQIIAQGTAQEIMQNEASITGKFLSGKEKIEIPKQRTPRDESKQLVLKGASGNNLKEVDLAIPVGLFTCITGV
SGSGKSTLINDTLFPIAQNALNRAENSDVAPYKSIDGLAHFDKVIDINQSPIGRTPRSNPATYTGLFTPIRELFAGTQEA
RARGYTVGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDHCKGKRYNRETLEIRYKGKTIHQVLDMTVEEAREFFD
AVPMIARKLQTLMDVGLSYIRLGQSSTTLSGGEAQRVKLAAELSKRDTGKTLYILDEPTTGLHFADIKQLLTVLHRLRDQ
GNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGQIIAEGTPEEVAKDKKSHTARFLNEILKKK

Nucleotide


Download         Length: 2829 bp        

>NTDB_id=320697 FEF05_RS06535 WP_149350936.1 1311613..1314441(+) (uvrA) [Glaesserella parasuis strain HPS-1]
ATGCAACATATTGATATTCGTGGGGCGAGAACCCACAATTTAAAAAACGTGAATTTGGTTCTTCCGAGAGATAAATTTAT
TGTGATTACAGGGTTGTCAGGGTCAGGCAAATCGTCTTTGGCTTTTGATACTCTTTATGCTGAAGGGCAACGTCGTTATG
TGGAAAGTTTATCCGCTTATGCTCGTCAGTTCTTGTCTTTAATGGAAAAGCCTGATGTCGATCACATTGAAGGGCTTTCC
CCTGCGATTTCAATTGAGCAGAAATCTACCTCACACAATCCTCGTTCTACGGTAGGGACGGTGACGGAAATCCACGATTA
TTTGCGTTTGTTGTTTGCCCGTGTGGGGGAGCCTCGCTGTCCTGATCACGATGTGCCGTTAGCGGCTCAGACAATTTCGC
AAATGGTGGATAGAGTTCTGGAAGAGCCTGAAGGTAAGCGTTTGATGTTGCTTTCTCCTGTGGTGAAAGATCGTAAAGGT
GAACACGCAAAATTATTAGAAAATCTGACCGCTAATGGTTATATCCGTGCCAGAATTGATGGGGAAATTTGTGATCTGTC
CGATCCGCCAAAACTTGAATTGCAGAAAAAACATACGATTGAAGTGGTAATTGATCGTTTTAAAGTACGTAGCGATATTG
CGACCCGTTTAGCGCAGTCCTTTGAAACGGCATTGGAACTTTCTGGCTCAACGGCGATTATTGCCGATATGGACGATCCA
AATGCGGAAGAGTTAGTGTTTTCGTCAAGTTTTGCTTGCTCTCATTGTGGCTATTCGCTGACGGAACTAGAACCACGCCT
TTTCTCGTTTAATAATCCGGCCGGAGCTTGCCCAACTTGTGATGGTTTGGGAGTTCAGCAATATTTTGATGAACGTAAAG
TGGTGCAAAACCCTGATGTGTCTTTAGCAAGCGGTGCGATTAAGGGTTGGGATCGCCGTAGTTTCTACTATTTCGGTTTG
TTGAAATCAGTGGCGAAACATTATGATTTTGATATTGAAATGCCGTTTAATCAGTTACCGAAGAAAATTCAAAATATCAT
TTTAAATGGTTCAAAAGATGAAATTGAATTTGTCTATGTGAATGATCGGGGTGATAGCGTTAAGCGAGTTCACACTTTTG
AAGGGGTGCTGAATAATATGGCTCGTCGGTATAAGGAAACCGAGTCAAATGCAGTGCGTGAAGAGCTGGCTAAATATATT
AATAATCGTGTTTGTACCGATTGTGAAGGCTCTCGTTTACGTCGTGAAGCCCGTTATGTCTTTTTAGAGAAAACCAACTT
GCCGATGGTGTCGGAAAAAAGTATCGGCGAAGCCTTAGAATTTTTTGAAGGCTTACATCTGTCTGGGCAGAAAGCACAAA
TTGCGGAAAAAATTCTCAAAGAGATCCGTGAGCGTTTGTCTTTCCTTGTTAATGTAGGGTTGAACTACCTTTCGCTCTCT
CGTTCGGCAGAAACCTTATCAGGTGGTGAAGCTCAACGTATTCGCCTTGCCAGCCAAATCGGTGCAGGGTTAGTGGGAGT
GATGTACGTGCTTGATGAACCGTCTATTGGCTTGCACCAACGAGATAATGAACGTTTACTAAACACGCTTATTCATCTTC
GGAATTTGGGTAATACCGTGATTGTGGTTGAACACGATGAAGATGCGATTATGGTGGCAGATCATATTGTCGATATTGGA
CCAGGGGCAGGGGTACACGGCGGTCAGATTATTGCTCAAGGCACAGCTCAAGAAATTATGCAAAATGAAGCATCGATTAC
GGGTAAATTCTTATCTGGTAAGGAAAAAATCGAGATCCCGAAACAGCGTACCCCACGAGATGAAAGCAAACAGCTGGTGT
TAAAAGGAGCAAGCGGTAATAACTTAAAAGAAGTCGATTTAGCTATTCCTGTTGGCTTGTTTACTTGTATTACAGGGGTA
TCGGGGTCGGGCAAATCTACCTTAATTAACGACACCTTATTCCCGATTGCTCAAAATGCGTTAAATCGTGCAGAAAACAG
CGATGTCGCCCCTTATAAGAGCATTGATGGCTTGGCACATTTCGATAAAGTAATCGACATCAATCAAAGTCCGATTGGAC
GTACTCCACGTTCAAACCCTGCGACTTACACTGGATTATTTACCCCGATCCGTGAACTCTTTGCAGGCACTCAGGAAGCA
AGAGCAAGGGGCTATACGGTCGGGCGTTTCAGCTTTAACGTACGTGGCGGACGTTGTGAAGCCTGTCAAGGTGACGGGGT
GATCAAAGTTGAAATGCACTTTTTACCTGATGTGTATGTGCCTTGCGATCACTGTAAAGGCAAACGCTACAACCGTGAAA
CCCTTGAAATTCGCTATAAAGGCAAAACCATTCATCAGGTGTTAGATATGACCGTGGAAGAAGCACGTGAGTTTTTTGAT
GCCGTGCCGATGATTGCTCGTAAGTTACAGACTTTGATGGACGTAGGCTTATCCTATATCCGTTTAGGGCAATCTTCTAC
CACCCTATCAGGTGGTGAAGCTCAACGGGTGAAACTGGCGGCGGAATTATCTAAACGTGATACGGGCAAAACCCTCTATA
TTCTTGATGAACCAACGACGGGATTGCACTTCGCCGACATTAAACAATTATTGACCGTATTACACCGCTTGCGTGATCAA
GGAAATACCATTGTGGTGATCGAGCATAACTTAGATGTGATCAAAACCGCAGACTGGATTGTCGATTTAGGCCCAGAAGG
CGGTAGCGGCGGCGGACAGATTATCGCTGAAGGTACACCTGAAGAGGTGGCAAAAGATAAGAAATCCCATACGGCACGTT
TTTTAAACGAAATCTTAAAAAAGAAATAA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(290-398)

UvrA interaction domain (UvrA_inter)

(130-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

56.93

99.575

0.567
  uvrA Streptococcus pneumoniae TIGR4

56.93

99.575

0.567
  uvrA Streptococcus pneumoniae D39

56.93

99.575

0.567