Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   D9829_RS15605 Genome accession   NZ_CP033044
Coordinates   3213798..3215489 (+) Length   563 a.a.
NCBI ID   WP_121611897.1    Uniprot ID   -
Organism   Mesobacillus foraminis strain Bac44     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3208798..3220489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9829_RS15580 - 3209214..3209447 (+) 234 WP_121611893.1 exodeoxyribonuclease VII small subunit -
  D9829_RS15585 - 3209510..3210343 (+) 834 WP_121613953.1 polyprenyl synthetase family protein -
  D9829_RS15590 dxs 3210447..3212339 (+) 1893 WP_121611894.1 1-deoxy-D-xylulose-5-phosphate synthase -
  D9829_RS15595 - 3212343..3213182 (+) 840 WP_121611895.1 TlyA family RNA methyltransferase -
  D9829_RS15600 ahrC 3213331..3213780 (+) 450 WP_121611896.1 transcriptional regulator AhrC/ArgR -
  D9829_RS15605 recN 3213798..3215489 (+) 1692 WP_121611897.1 DNA repair protein RecN Machinery gene
  D9829_RS15610 spoIVB 3215616..3216905 (+) 1290 WP_121611898.1 SpoIVB peptidase -
  D9829_RS15620 spo0A 3217360..3218151 (+) 792 WP_121611900.1 sporulation transcription factor Spo0A -
  D9829_RS15625 - 3218287..3218427 (-) 141 WP_121611901.1 YycC family protein -
  D9829_RS15630 - 3218453..3219190 (+) 738 WP_306822051.1 glycerophosphodiester phosphodiesterase -
  D9829_RS15635 - 3219212..3219469 (-) 258 WP_121611903.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63708.63 Da        Isoelectric Point: 5.1106

>NTDB_id=320694 D9829_RS15605 WP_121611897.1 3213798..3215489(+) (recN) [Mesobacillus foraminis strain Bac44]
MLSELTIRNFAIIESLSVSFQKGLTVLTGETGAGKSIIIDAVHLLVGGRGSAEFVRHGEEKAEIEGLFFIDGSQHPVLEK
AKEFGIEVEDGMIVLRRDISRSGKSVCRVNGKLVTIALLREVGSALIDIHGQHEHQELMDETKHISLLDQFGSEEIIPAV
LEYQNVYRDYEQKLKKLRSLSENEQQMAHRLDLIQFQYEEIQNAQLKINEDEELAEEKRKLNNFEKVFESVQSSYTAING
DQRGLDWIGLAMENLETAAELDPAYKELHESVANSFYLLEDAARSLRNELDVLEYDPQRLNEIEDRLNEINQLKRKYGKT
IEEILEYSAKIEEEIETLQNKEVHIGQMEKELASLKKDLQLEAANLNKARKKWAKKLTGLIHRELKELYMEKTVFEVKIE
TDEDHFLKNGTDQVEFYISTNPGEPLKPLSKVASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIY
KVAMNSQVLCISHLPQVAAMADTHLYIAKKIKGGRTKTSVTPLTESDKVHEIGRMISGVEITDLTRQHAEELLQLARLMK
TPT

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=320694 D9829_RS15605 WP_121611897.1 3213798..3215489(+) (recN) [Mesobacillus foraminis strain Bac44]
TTGTTAAGTGAATTAACAATCAGAAACTTTGCCATTATAGAGTCCCTCTCCGTTTCATTTCAAAAGGGCCTCACTGTTTT
GACAGGAGAAACAGGGGCGGGAAAATCAATCATCATCGATGCTGTACATCTTCTTGTTGGCGGCAGGGGATCCGCAGAAT
TTGTCCGTCATGGGGAAGAAAAGGCTGAAATTGAAGGGTTATTTTTTATTGATGGCAGCCAGCACCCGGTATTGGAAAAA
GCGAAGGAGTTTGGAATTGAAGTGGAGGACGGAATGATCGTCCTTCGCAGGGATATTTCCAGAAGCGGAAAAAGTGTCTG
CCGGGTGAATGGGAAATTGGTGACGATTGCCTTATTGAGAGAAGTTGGTTCTGCTTTAATCGATATTCACGGGCAGCATG
AGCATCAGGAACTCATGGATGAAACCAAACATATCTCCCTGCTGGACCAGTTTGGGTCTGAAGAGATAATTCCGGCTGTA
CTTGAATATCAGAATGTATACCGGGATTATGAACAAAAGCTTAAAAAACTTAGAAGCCTGAGTGAGAACGAACAGCAAAT
GGCCCATAGACTTGATCTCATTCAATTTCAATATGAGGAAATCCAAAACGCTCAATTAAAAATAAATGAAGATGAAGAGC
TGGCGGAAGAGAAACGAAAACTAAACAATTTTGAGAAGGTTTTTGAGAGCGTCCAGTCAAGCTATACTGCCATTAATGGA
GACCAAAGAGGGTTAGATTGGATTGGATTGGCGATGGAGAACCTTGAAACTGCGGCAGAGCTGGATCCTGCCTATAAGGA
ATTACACGAGTCCGTTGCCAACAGTTTTTATTTGCTGGAAGATGCTGCGCGCTCGCTGAGGAATGAACTTGATGTTCTGG
AATATGATCCCCAGAGATTAAACGAAATTGAAGACAGGCTGAATGAAATTAATCAGTTAAAGCGAAAATACGGCAAGACC
ATTGAAGAAATCCTTGAGTACTCGGCTAAAATAGAAGAGGAAATTGAGACATTGCAAAATAAGGAAGTCCATATCGGGCA
GATGGAGAAGGAACTGGCGTCCTTAAAAAAAGATCTGCAGCTTGAGGCGGCCAATTTGAATAAAGCAAGAAAGAAGTGGG
CCAAAAAGCTGACAGGGCTTATCCATCGGGAATTAAAAGAGCTATACATGGAAAAAACCGTCTTTGAAGTGAAAATCGAG
ACAGATGAGGACCATTTCTTAAAGAATGGTACGGATCAAGTTGAATTTTATATTTCCACAAATCCGGGGGAGCCGTTAAA
ACCATTGTCTAAAGTAGCCTCCGGCGGAGAATTATCAAGGATCATGCTGGCACTGAAAAGCATTTTTTCCAAACATCAAG
GTGTTACATCCATTATTTTTGATGAAGTGGATACTGGTGTCAGCGGGAGGGTCGCACAGGCAATCGCCGAAAAAATATAT
AAAGTTGCCATGAATTCACAGGTACTTTGTATATCCCACTTGCCTCAGGTTGCGGCAATGGCAGATACACACTTGTACAT
TGCCAAAAAAATAAAAGGGGGCCGGACGAAAACATCGGTAACTCCTTTAACAGAAAGTGACAAGGTCCACGAAATTGGAC
GAATGATATCAGGTGTCGAAATAACCGATCTGACCAGGCAGCACGCCGAGGAATTATTGCAGCTTGCCCGGTTGATGAAA
ACTCCTACATGA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

63.478

100

0.648

Multiple sequence alignment